Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 EI24P3-201ENST00000399046 1062 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 HMGB3P7-201ENST00000400214 611 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AL390316.1-201ENST00000406279 553 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AL138878.2-201ENST00000440581 1241 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AL353898.1-201ENST00000444055 238 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 TPT1P13-201ENST00000449760 499 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 RN7SL860P-201ENST00000473738 223 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC034244.2-201ENST00000514668 858 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC091042.1-201ENST00000579213 173 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC127024.5-201ENST00000580085 462 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC024933.1-201ENST00000608472 348 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC245389.2-201ENST00000616023 576 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC242843.1-201ENST00000618702 573 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC093849.1-201ENST00000563631 2209 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC099654.2-201ENST00000433031 1980 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 SNORA63.3-201ENST00000362682 132 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 GCNT6-201ENST00000379591 934 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC013442.1-201ENST00000397347 228 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC136624.1-201ENST00000400791 413 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 SNORA77-201ENST00000408716 125 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 RNU2-50P-201ENST00000410494 143 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC006065.1-201ENST00000422539 802 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 FTLP19-201ENST00000433300 394 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 RBMY2TP-201ENST00000451162 947 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 PRPF38AP1-201ENST00000451976 933 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 RPL5P13-201ENST00000462840 709 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AL049874.2-201ENST00000492636 288 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC008897.1-201ENST00000494006 347 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 CEACAMP10-202ENST00000495431 496 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 IMPA1P1-201ENST00000510718 842 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC079075.1-201ENST00000559543 878 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 MTCYBP13-201ENST00000578634 1093 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 EIF1P5-201ENST00000585002 234 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC005377.1-201ENST00000605126 456 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC092159.4-201ENST00000624944 550 ntBASIC5.35□□□□□ -1.55
USP41Q3LFD5 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP41Q3LFD5 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.35□□□□□ -1.55
USP41Q3LFD5 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms