Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC108751.5-201ENST00000492880 1336 ntBASIC4.14□□□□□ -1.75
FOXF1Q12946 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXF1Q12946 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXF1Q12946 AC026523.2-201ENST00000625039 7739 ntBASIC4.14□□□□□ -1.75
FOXF1Q12946 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXF1Q12946 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXF1Q12946 NR1H5P-201ENST00000452683 1377 ntBASIC4.14□□□□□ -1.75
FOXF1Q12946 OR51H2P-202ENST00000641424 3046 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXF1Q12946 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
FOXF1Q12946 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
FOXF1Q12946 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 SNORD113.2-201ENST00000364166 89 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 RNU6-398P-201ENST00000384143 109 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 AC002524.1-201ENST00000411687 547 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 AC119751.6-201ENST00000416712 186 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 CYCSP10-201ENST00000417973 294 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.13□□□□□ -1.75
FOXF1Q12946 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXF1Q12946 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXF1Q12946 RPL23AP93-201ENST00000440847 484 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXF1Q12946 SEPT7P3-201ENST00000455017 621 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
FOXF1Q12946 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXF1Q12946 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXF1Q12946 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXF1Q12946 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.13□□□□□ -1.75
FOXF1Q12946 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
FOXF1Q12946 RN7SL52P-201ENST00000584271 284 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 AC091178.1-203ENST00000584586 279 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 AL133406.3-201ENST00000606817 541 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 SNORD91B-202ENST00000608459 222 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 AC097505.1-201ENST00000610199 565 ntBASIC4.13□□□□□ -1.75
FOXF1Q12946 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
FOXF1Q12946 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
FOXF1Q12946 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
FOXF1Q12946 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
FOXF1Q12946 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXF1Q12946 MAPK10-303ENST00000641324 3959 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXF1Q12946 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXF1Q12946 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXF1Q12946 SAMMSON-213ENST00000641336 1521 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXF1Q12946 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXF1Q12946 MIR192-201ENST00000384915 110 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 GLULP6-201ENST00000399502 913 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 MIR921-201ENST00000401133 56 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 SNORA11B-201ENST00000408175 129 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 UQCRBP1-201ENST00000421129 336 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXF1Q12946 AC011753.3-201ENST00000443436 406 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 ARL2BPP10-201ENST00000446487 531 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXF1Q12946 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXF1Q12946 RFPL4AP5-201ENST00000514977 504 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXF1Q12946 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXF1Q12946 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXF1Q12946 RN7SL176P-201ENST00000580352 264 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXF1Q12946 ADAD1P2-201ENST00000588476 646 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.12□□□□□ -1.75
FOXF1Q12946 AL034374.2-201ENST00000605281 548 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AL133243.1-201ENST00000614487 366 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AL049536.1-201ENST00000625043 744 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXF1Q12946 TMEM30CP-203ENST00000637814 1035 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXF1Q12946 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
FOXF1Q12946 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXF1Q12946 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXF1Q12946 BTBD10P1-201ENST00000549824 1352 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXF1Q12946 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXF1Q12946 OR4G1P-202ENST00000641173 1788 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 VN2R3P-201ENST00000422626 1412 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXF1Q12946 DHX40P1-201ENST00000588725 1412 ntBASIC4.12□□□□□ -1.75
FOXF1Q12946 AC012618.3-205ENST00000637896 1496 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXF1Q12946 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXF1Q12946 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXF1Q12946 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXF1Q12946 OR4K15-201ENST00000305051 1216 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 RNA5SP332-201ENST00000391063 115 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 FCF1P5-201ENST00000406490 482 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 RPL37P18-201ENST00000411602 243 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms