Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC008429.2-201ENST00000523057 864 ntBASIC6.59□□□□□ -1.35
LIG3P49916 OR8A2P-201ENST00000528631 952 ntBASIC6.59□□□□□ -1.35
LIG3P49916 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC6.59□□□□□ -1.35
LIG3P49916 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.59□□□□□ -1.35
LIG3P49916 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
LIG3P49916 AL162632.2-201ENST00000553933 399 ntBASIC6.59□□□□□ -1.35
LIG3P49916 GTF2IP22-201ENST00000554443 182 ntBASIC6.59□□□□□ -1.35
LIG3P49916 OR11J2P-201ENST00000555298 907 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC6.59□□□□□ -1.35
LIG3P49916 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC6.59□□□□□ -1.35
LIG3P49916 OR4G1P-201ENST00000588632 938 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AC020914.6-201ENST00000594327 272 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AC012368.3-201ENST00000604190 219 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AP004247.3-201ENST00000608682 624 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AC016769.4-201ENST00000616893 535 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AC089999.3-201ENST00000622440 577 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC6.59□□□□□ -1.35
LIG3P49916 AC018692.2-201ENST00000624130 348 ntBASIC6.59□□□□□ -1.35
LIG3P49916 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
LIG3P49916 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
LIG3P49916 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.59□□□□□ -1.36
LIG3P49916 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
LIG3P49916 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.59□□□□□ -1.36
LIG3P49916 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
LIG3P49916 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
LIG3P49916 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 AC107982.1-201ENST00000507171 1300 ntBASIC6.58□□□□□ -1.36
LIG3P49916 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 OR4G2P-201ENST00000328113 903 ntBASIC6.58□□□□□ -1.36
LIG3P49916 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 RNU6-501P-201ENST00000364072 100 ntBASIC6.58□□□□□ -1.36
LIG3P49916 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
LIG3P49916 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 MIR548F1-201ENST00000408667 84 ntBASIC6.58□□□□□ -1.36
LIG3P49916 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 RN7SKP129-201ENST00000410288 299 ntBASIC6.58□□□□□ -1.36
LIG3P49916 RN7SKP161-201ENST00000411110 305 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AC068533.2-201ENST00000411872 306 ntBASIC6.58□□□□□ -1.36
LIG3P49916 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 HMGA1P8-201ENST00000414130 321 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AL359092.1-201ENST00000417156 265 ntBASIC6.58□□□□□ -1.36
LIG3P49916 MRPS21P5-201ENST00000417885 231 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 AC093698.1-201ENST00000423843 571 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 NPM1P22-201ENST00000427761 952 ntBASIC6.58□□□□□ -1.36
LIG3P49916 DPPA2P1-201ENST00000428060 556 ntBASIC6.58□□□□□ -1.36
LIG3P49916 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 RPL7P4-203ENST00000430239 730 ntBASIC6.58□□□□□ -1.36
LIG3P49916 MTND1P28-201ENST00000435623 950 ntBASIC6.58□□□□□ -1.36
LIG3P49916 LINC00328-2P-201ENST00000436585 219 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 ANKRD30BP3-201ENST00000444850 1070 ntBASIC6.58□□□□□ -1.36
LIG3P49916 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 MTCO3P38-201ENST00000468910 766 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 RPL29P23-201ENST00000486188 442 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC6.58□□□□□ -1.36
LIG3P49916 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 RPL19P11-201ENST00000495944 589 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AC116353.2-201ENST00000505332 712 ntBASIC6.58□□□□□ -1.36
LIG3P49916 HMGB1P44-201ENST00000508597 572 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AC109471.1-201ENST00000511631 612 ntBASIC6.58□□□□□ -1.36
LIG3P49916 ATG10-208ENST00000513634 618 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.58□□□□□ -1.36
LIG3P49916 MIR548S-201ENST00000581352 82 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.58□□□□□ -1.36
LIG3P49916 ELOCP28-201ENST00000590044 317 ntBASIC6.58□□□□□ -1.36
LIG3P49916 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.58□□□□□ -1.36
LIG3P49916 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 AC012065.4-201ENST00000602445 679 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AL390816.3-201ENST00000604527 1066 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AC019257.2-201ENST00000605539 497 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AL589743.6-201ENST00000611025 117 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AL357080.1-201ENST00000617394 239 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AC005609.4-201ENST00000625071 447 ntBASIC6.58□□□□□ -1.36
LIG3P49916 MKKS-204ENST00000639674 192 ntBASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms