Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 PHKBP1-201ENST00000450951 1951 ntBASIC4.38□□□□□ -1.71
CDX1P47902 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 AC100871.1-201ENST00000507871 1456 ntBASIC4.38□□□□□ -1.71
CDX1P47902 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.38□□□□□ -1.71
CDX1P47902 RN7SKP160-201ENST00000363804 340 ntBASIC4.38□□□□□ -1.71
CDX1P47902 RNU6-354P-201ENST00000383862 107 ntBASIC4.38□□□□□ -1.71
CDX1P47902 RNU6-610P-201ENST00000384264 107 ntBASIC4.38□□□□□ -1.71
CDX1P47902 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.38□□□□□ -1.71
CDX1P47902 AC234782.4-201ENST00000417646 1048 ntBASIC4.38□□□□□ -1.71
CDX1P47902 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.38□□□□□ -1.71
CDX1P47902 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AL133173.1-201ENST00000423458 397 ntBASIC4.38□□□□□ -1.71
CDX1P47902 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 DYNLL1P7-201ENST00000429273 258 ntBASIC4.38□□□□□ -1.71
CDX1P47902 RPL12P46-201ENST00000436610 195 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AL450263.2-201ENST00000439400 589 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AL096829.2-201ENST00000446582 742 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AC239809.1-201ENST00000450470 217 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AL450023.1-201ENST00000450868 751 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 RPL7P45-201ENST00000455851 743 ntBASIC4.38□□□□□ -1.71
CDX1P47902 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC4.38□□□□□ -1.71
CDX1P47902 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.38□□□□□ -1.71
CDX1P47902 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.38□□□□□ -1.71
CDX1P47902 AC104108.1-201ENST00000509930 412 ntBASIC4.38□□□□□ -1.71
CDX1P47902 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
CDX1P47902 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 AP003355.1-201ENST00000518956 587 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.38□□□□□ -1.71
CDX1P47902 AC092709.1-201ENST00000521355 1045 ntBASIC4.38□□□□□ -1.71
CDX1P47902 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.38□□□□□ -1.71
CDX1P47902 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.38□□□□□ -1.71
CDX1P47902 AC079064.1-201ENST00000528365 362 ntBASIC4.38□□□□□ -1.71
CDX1P47902 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.38□□□□□ -1.71
CDX1P47902 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC4.38□□□□□ -1.71
CDX1P47902 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 AC090751.1-201ENST00000566966 267 ntBASIC4.38□□□□□ -1.71
CDX1P47902 ATP5F1P7-201ENST00000567330 760 ntBASIC4.38□□□□□ -1.71
CDX1P47902 MTND4LP24-201ENST00000572277 291 ntBASIC4.38□□□□□ -1.71
CDX1P47902 MIR4311-201ENST00000580794 100 ntBASIC4.38□□□□□ -1.71
CDX1P47902 MIR3176-201ENST00000582210 90 ntBASIC4.38□□□□□ -1.71
CDX1P47902 RN7SL52P-201ENST00000584271 284 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AC110743.1-201ENST00000584870 478 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AC087283.1-201ENST00000604029 1074 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AC009027.1-201ENST00000604510 479 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AC096586.1-201ENST00000610267 561 ntBASIC4.38□□□□□ -1.71
CDX1P47902 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.38□□□□□ -1.71
CDX1P47902 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.38□□□□□ -1.71
CDX1P47902 MIR6886-201ENST00000619864 61 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AC103798.2-201ENST00000624292 632 ntBASIC4.38□□□□□ -1.71
CDX1P47902 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CDX1P47902 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CDX1P47902 AL132640.2-201ENST00000559968 1698 ntBASIC4.38□□□□□ -1.71
CDX1P47902 AC005332.5-201ENST00000591222 2919 ntBASIC4.38□□□□□ -1.71
CDX1P47902 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CDX1P47902 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.37□□□□□ -1.71
CDX1P47902 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
CDX1P47902 AL353743.4-201ENST00000422653 1547 ntBASIC4.37□□□□□ -1.71
CDX1P47902 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
CDX1P47902 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 ENSAP3-201ENST00000312710 333 ntBASIC4.37□□□□□ -1.71
CDX1P47902 RNU6-543P-201ENST00000362576 108 ntBASIC4.37□□□□□ -1.71
CDX1P47902 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 RNU6-146P-201ENST00000384602 108 ntBASIC4.37□□□□□ -1.71
CDX1P47902 MIR551A-201ENST00000385042 96 ntBASIC4.37□□□□□ -1.71
CDX1P47902 SNORA48.4-201ENST00000391089 134 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.37□□□□□ -1.71
CDX1P47902 RPL23AP59-201ENST00000399415 461 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AL512430.2-201ENST00000406786 339 ntBASIC4.37□□□□□ -1.71
CDX1P47902 RN7SKP229-201ENST00000410465 302 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AC092745.2-202ENST00000411880 369 ntBASIC4.37□□□□□ -1.71
CDX1P47902 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.37□□□□□ -1.71
CDX1P47902 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.37□□□□□ -1.71
CDX1P47902 AC073069.1-201ENST00000428657 441 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 RPS20P1-201ENST00000434853 354 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms