Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NDUFB4P11-201ENST00000560510 395 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.32□□□□□ -1.56
PTPN9P43378 AP005262.1-201ENST00000582646 997 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC091057.3-201ENST00000602684 733 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.32□□□□□ -1.56
PTPN9P43378 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC099654.8-201ENST00000637757 681 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
PTPN9P43378 SOCS5P3-201ENST00000425115 1576 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
PTPN9P43378 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
PTPN9P43378 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.32□□□□□ -1.56
PTPN9P43378 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.32□□□□□ -1.56
PTPN9P43378 AL121950.1-201ENST00000624993 2077 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 HSPD1P11-201ENST00000508643 1702 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PTPN9P43378 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.31□□□□□ -1.56
PTPN9P43378 HSPD1P14-201ENST00000432666 1618 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PTPN9P43378 CIR1P2-201ENST00000514821 1342 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 MFSD8-213ENST00000641134 1327 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
PTPN9P43378 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
PTPN9P43378 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTPN9P43378 RNU6-249P-201ENST00000363016 102 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC5.31□□□□□ -1.56
PTPN9P43378 AC211486.3-201ENST00000412694 621 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.31□□□□□ -1.56
PTPN9P43378 PNRC2P1-201ENST00000423940 420 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.31□□□□□ -1.56
PTPN9P43378 BX323845.1-201ENST00000432417 179 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.31□□□□□ -1.56
PTPN9P43378 RBMY2TP-201ENST00000451162 947 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.31□□□□□ -1.56
PTPN9P43378 WDR78-207ENST00000488333 613 ntTSL 3 BASIC5.31□□□□□ -1.56
PTPN9P43378 GTF2IP9-201ENST00000502460 301 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.31□□□□□ -1.56
PTPN9P43378 RNA5SP34-201ENST00000516887 130 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC5.31□□□□□ -1.56
PTPN9P43378 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.31□□□□□ -1.56
PTPN9P43378 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.31□□□□□ -1.56
PTPN9P43378 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.31□□□□□ -1.56
PTPN9P43378 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.31□□□□□ -1.56
PTPN9P43378 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.31□□□□□ -1.56
PTPN9P43378 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.31□□□□□ -1.56
PTPN9P43378 TAS2R6P-201ENST00000605022 826 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 AC124016.2-201ENST00000610058 665 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 RNU6-1192P-201ENST00000612197 107 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 AL512624.1-201ENST00000613638 469 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 BNIP3P41-202ENST00000616656 861 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 RNU6-489P-201ENST00000618289 107 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC5.31□□□□□ -1.56
PTPN9P43378 AC126544.2-201ENST00000625174 749 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
PTPN9P43378 AC013437.2-201ENST00000639587 677 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
PTPN9P43378 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.31□□□□□ -1.56
PTPN9P43378 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.31□□□□□ -1.56
PTPN9P43378 SAMMSON-213ENST00000641336 1521 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.31□□□□□ -1.56
PTPN9P43378 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PTPN9P43378 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTPN9P43378 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTPN9P43378 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTPN9P43378 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
PTPN9P43378 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTPN9P43378 AC005005.4-201ENST00000623789 16698 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.3□□□□□ -1.56
PTPN9P43378 AL450345.1-202ENST00000605741 3881 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.3□□□□□ -1.56
PTPN9P43378 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.3□□□□□ -1.56
PTPN9P43378 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.3□□□□□ -1.56
PTPN9P43378 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.3□□□□□ -1.56
PTPN9P43378 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTPN9P43378 RN7SKP74-201ENST00000362849 309 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 SNORD56.4-201ENST00000363883 71 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AC234772.1-201ENST00000377927 937 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 RNU4-31P-201ENST00000384211 141 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AP002784.2-201ENST00000397300 549 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 Z68694.1-201ENST00000413929 841 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 EIF4A1P1-201ENST00000420241 934 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AC241520.1-201ENST00000422654 1099 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 PTP4A1P7-201ENST00000423476 514 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTPN9P43378 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 AL354714.3-201ENST00000447284 493 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.3□□□□□ -1.56
PTPN9P43378 CYCSP42-201ENST00000450823 238 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AURKAPS1-201ENST00000451805 1212 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.3□□□□□ -1.56
PTPN9P43378 AC245028.2-201ENST00000458673 253 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms