Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC6.32□□□□□ -1.4
COL6A1P12109 DNAJB5P1-201ENST00000454004 806 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC6.32□□□□□ -1.4
COL6A1P12109 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.32□□□□□ -1.4
COL6A1P12109 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC6.32□□□□□ -1.4
COL6A1P12109 AL672167.3-201ENST00000465951 960 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 AC037198.2-201ENST00000478845 733 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AC109462.1-201ENST00000491087 368 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.32□□□□□ -1.4
COL6A1P12109 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.32□□□□□ -1.4
COL6A1P12109 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.32□□□□□ -1.4
COL6A1P12109 AC133963.2-201ENST00000513686 578 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC6.32□□□□□ -1.4
COL6A1P12109 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 CASP1-216ENST00000534497 825 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 MIR4480-201ENST00000582492 71 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 AC004890.3-201ENST00000605566 1095 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 OR2AS2P-201ENST00000606902 342 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC6.32□□□□□ -1.4
COL6A1P12109 AC009163.6-201ENST00000612367 342 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AC005332.10-201ENST00000612725 619 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AL118522.2-201ENST00000616045 615 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AL355974.3-201ENST00000617383 467 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 AP002505.2-201ENST00000623585 696 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 LINC01739-205ENST00000641890 573 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
COL6A1P12109 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.32□□□□□ -1.4
COL6A1P12109 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.32□□□□□ -1.4
COL6A1P12109 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 IMMTP1-201ENST00000435590 2219 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.31□□□□□ -1.4
COL6A1P12109 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
COL6A1P12109 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL6A1P12109 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC6.31□□□□□ -1.4
COL6A1P12109 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 RAB28P1-201ENST00000411517 641 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 EIF4A1P1-201ENST00000420241 934 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 SRSF1P1-201ENST00000424058 520 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.31□□□□□ -1.4
COL6A1P12109 CYCSP11-201ENST00000436426 315 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AC000041.1-201ENST00000439655 175 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AC015983.1-201ENST00000441577 373 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 CEACAMP9-201ENST00000442990 513 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 MTND1P1-201ENST00000445453 368 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6.31□□□□□ -1.4
COL6A1P12109 AC002553.2-201ENST00000453217 340 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC6.31□□□□□ -1.4
COL6A1P12109 RPL38P3-201ENST00000484463 213 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC6.31□□□□□ -1.4
COL6A1P12109 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC6.31□□□□□ -1.4
COL6A1P12109 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.31□□□□□ -1.4
COL6A1P12109 AC134698.4-201ENST00000523451 826 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AP003461.1-201ENST00000528866 78 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 NDUFS5P6-201ENST00000529136 295 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC6.31□□□□□ -1.4
COL6A1P12109 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC6.31□□□□□ -1.4
COL6A1P12109 AC126615.2-201ENST00000553003 515 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC6.31□□□□□ -1.4
COL6A1P12109 MTND4LP24-201ENST00000572277 291 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 DPRXP4-201ENST00000578053 568 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC6.31□□□□□ -1.4
COL6A1P12109 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC6.31□□□□□ -1.4
COL6A1P12109 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 AC073137.1-201ENST00000605636 634 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 FAM25E-202ENST00000608562 189 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AL133243.1-201ENST00000614487 366 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 RMST_10.1-201ENST00000616309 154 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AL121890.2-201ENST00000617644 465 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 AC010975.3-201ENST00000618727 978 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms