Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC4P09017 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXC4P09017 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
HOXC4P09017 AL359922.3-201ENST00000624779 1670 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.61□□□□□ -1.67
HOXC4P09017 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 RPL12P28-201ENST00000430852 489 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC4P09017 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC4P09017 YWHAZP2-201ENST00000440317 728 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 TXNP2-201ENST00000443918 295 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 CYCSP42-201ENST00000450823 238 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC4P09017 RN7SL459P-201ENST00000481078 302 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 MTND4LP2-201ENST00000502312 285 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC4P09017 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXC4P09017 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC4P09017 AC007016.1-201ENST00000512110 244 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 HMGB1P19-201ENST00000517578 577 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC4P09017 AP000827.1-201ENST00000527814 258 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXC4P09017 CYCSP40-201ENST00000575927 294 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC4P09017 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXC4P09017 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXC4P09017 AF230666.2-201ENST00000602328 725 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 AC068790.4-201ENST00000602474 263 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 AC093765.1-201ENST00000603758 881 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 AC087468.1-201ENST00000604365 630 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC4P09017 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
HOXC4P09017 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 OR51H2P-202ENST00000641424 3046 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC4P09017 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC4P09017 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.61□□□□□ -1.67
HOXC4P09017 AC100778.3-201ENST00000580060 1750 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 AC005005.4-201ENST00000623789 16698 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
HOXC4P09017 CUL4AP1-201ENST00000514750 1863 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC4P09017 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC4P09017 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC4P09017 SNORA71.2-201ENST00000364941 134 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC4P09017 AC069213.2-201ENST00000420238 366 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 E2F6P2-201ENST00000420708 748 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 AC006065.1-201ENST00000422539 802 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 TMX2P1-201ENST00000436507 708 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 GTF3AP5-201ENST00000442645 697 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 AL157385.1-201ENST00000446973 268 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 AC104651.2-201ENST00000447549 528 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC4P09017 SCARNA10-201ENST00000459255 330 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXC4P09017 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC4P09017 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.6□□□□□ -1.67
HOXC4P09017 RAB9BP1-201ENST00000519581 626 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC4P09017 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.6□□□□□ -1.67
HOXC4P09017 GSTP1P1-201ENST00000548078 319 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 MTND2P17-201ENST00000550281 688 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC4P09017 MIR4715-201ENST00000584117 79 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 AL133338.2-201ENST00000604292 736 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXC4P09017 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
HOXC4P09017 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC4P09017 OR14L1P-202ENST00000641545 3009 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC4P09017 MTND5P23-201ENST00000430812 1655 ntBASIC4.6□□□□□ -1.67
HOXC4P09017 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXC4P09017 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC4P09017 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXC4P09017 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.67
HOXC4P09017 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXC4P09017 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.59□□□□□ -1.67
HOXC4P09017 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXC4P09017 MIR141-201ENST00000384975 95 ntBASIC4.59□□□□□ -1.67
HOXC4P09017 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXC4P09017 MIR1271-201ENST00000408537 86 ntBASIC4.59□□□□□ -1.67
HOXC4P09017 UQCRBP1-201ENST00000421129 336 ntBASIC4.59□□□□□ -1.67
HOXC4P09017 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms