Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC004938.1-201ENST00000438468 308 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.17□□□□□ -1.58
CLDN3O15551 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.17□□□□□ -1.58
CLDN3O15551 RPL36AP15-201ENST00000444514 266 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AL589765.3-201ENST00000446084 462 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 TPT1P1-201ENST00000458495 518 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 HMGN1P8-201ENST00000463578 288 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.17□□□□□ -1.58
CLDN3O15551 AC007686.1-201ENST00000488511 463 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
CLDN3O15551 AK4P6-201ENST00000505168 528 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.17□□□□□ -1.58
CLDN3O15551 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.17□□□□□ -1.58
CLDN3O15551 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 RNU2-30P-201ENST00000516209 141 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.17□□□□□ -1.58
CLDN3O15551 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.17□□□□□ -1.58
CLDN3O15551 AC063949.1-201ENST00000552900 865 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 FKBP1BP1-201ENST00000553366 325 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AL110118.1-201ENST00000553543 400 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CLDN3O15551 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.17□□□□□ -1.58
CLDN3O15551 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.17□□□□□ -1.58
CLDN3O15551 RN7SL652P-201ENST00000577769 300 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.17□□□□□ -1.58
CLDN3O15551 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.17□□□□□ -1.58
CLDN3O15551 AC012213.4-201ENST00000606457 354 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 MIR6780A-201ENST00000615089 68 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AP001005.3-201ENST00000622049 129 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AC015871.5-202ENST00000623252 701 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AC011815.3-201ENST00000624194 473 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AC012618.3-205ENST00000637896 1496 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.17□□□□□ -1.58
CLDN3O15551 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CLDN3O15551 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.16□□□□□ -1.58
CLDN3O15551 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CLDN3O15551 HSPA8P17-201ENST00000427029 1382 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 ZFRP1-201ENST00000457579 2970 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.16□□□□□ -1.58
CLDN3O15551 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 CASC19-206ENST00000641028 1430 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 AL121950.1-201ENST00000624993 2077 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 AL136164.3-201ENST00000624429 3978 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 AC008549.2-201ENST00000333482 706 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CLDN3O15551 AL590762.2-201ENST00000395798 571 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 TRIM60P17-201ENST00000415181 719 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 MTND4LP13-201ENST00000425022 298 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.16□□□□□ -1.58
CLDN3O15551 H2AFZP5-201ENST00000446960 382 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.16□□□□□ -1.58
CLDN3O15551 RHEBP2-201ENST00000450289 600 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 AC079168.2-201ENST00000453977 416 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 RPS29P22-201ENST00000472363 168 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CLDN3O15551 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.16□□□□□ -1.58
CLDN3O15551 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.16□□□□□ -1.58
CLDN3O15551 MIR4700-201ENST00000578311 74 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.16□□□□□ -1.58
CLDN3O15551 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.16□□□□□ -1.58
CLDN3O15551 OR7A19P-201ENST00000608051 733 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.16□□□□□ -1.58
CLDN3O15551 AL590410.1-201ENST00000617925 333 ntBASIC5.16□□□□□ -1.58
CLDN3O15551 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.16□□□□□ -1.58
CLDN3O15551 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.16□□□□□ -1.58
CLDN3O15551 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CLDN3O15551 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CLDN3O15551 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
CLDN3O15551 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CLDN3O15551 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.15□□□□□ -1.58
CLDN3O15551 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CLDN3O15551 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
CLDN3O15551 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.15□□□□□ -1.58
CLDN3O15551 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.15□□□□□ -1.58
CLDN3O15551 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
CLDN3O15551 UBBP2-201ENST00000376781 231 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
CLDN3O15551 AL136131.1-201ENST00000406079 803 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 RN7SKP267-201ENST00000410381 285 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 AL590139.1-201ENST00000416267 400 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 CKS1BP6-201ENST00000424932 240 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.15□□□□□ -1.59
CLDN3O15551 RPL34P6-201ENST00000432390 345 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 AL359265.2-201ENST00000434367 631 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.15□□□□□ -1.59
CLDN3O15551 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.15□□□□□ -1.59
CLDN3O15551 AL513533.1-201ENST00000453728 415 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 AL133244.1-201ENST00000456007 258 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 AC010326.1-201ENST00000462726 602 ntBASIC5.15□□□□□ -1.59
CLDN3O15551 AC093890.1-201ENST00000502554 540 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms