Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC079809.1-201ENST00000415468 276 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AF186996.5-201ENST00000418098 904 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 EIF2S2P3-201ENST00000428356 999 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 BX323845.1-201ENST00000432417 179 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 HMGB3P10-201ENST00000434734 572 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 RPL7P11-201ENST00000437586 658 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC011753.3-201ENST00000443436 406 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 GAPDHP14-201ENST00000450472 937 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 NDUFA12P1-201ENST00000455914 406 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 RN7SL459P-201ENST00000481078 302 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 HMGB1P3-201ENST00000502802 616 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 GAPDHP56-201ENST00000506031 988 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 MRPS33P2-201ENST00000507850 322 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC025768.1-201ENST00000510057 267 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC034244.2-201ENST00000514668 858 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC091042.1-201ENST00000579213 173 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 FAM106CP-201ENST00000582212 507 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 MTCO2P22-201ENST00000603246 681 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC005014.3-201ENST00000605985 190 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 MIR378J-201ENST00000611988 109 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AP000346.3-201ENST00000622821 210 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC092159.4-201ENST00000624944 550 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC063976.2-201ENST00000425667 3556 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 ADAM24P-201ENST00000398655 2101 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 A2MP1-204ENST00000566278 4130 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 SNORA2.3-201ENST00000383920 135 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 RNU6-729P-201ENST00000384399 107 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 RPS16P5-201ENST00000406501 404 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 Z86062.1-201ENST00000406773 777 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 RNA5SP296-201ENST00000410523 111 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 NPM1P40-201ENST00000412758 733 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC073508.1-201ENST00000428866 656 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC009238.2-201ENST00000431026 355 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 RPL5P25-201ENST00000441148 775 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC007000.2-201ENST00000442564 487 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC004980.3-201ENST00000447046 365 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC073264.2-201ENST00000448886 166 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 TCEA1P1-201ENST00000449716 880 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 MTND2P30-201ENST00000456663 382 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC027338.1-201ENST00000514840 825 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 RAB9BP1-201ENST00000519581 626 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 OR5AN2P-201ENST00000534535 896 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 CKS1BP1-201ENST00000555221 240 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC022884.2-201ENST00000578535 580 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 EIF1P5-201ENST00000585002 234 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms