Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC015871.5-202ENST00000623252 701 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 DDX18P5-201ENST00000534547 1306 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS39Q96JC1 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS39Q96JC1 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 GSTA12P-201ENST00000402398 508 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 Z97832.1-201ENST00000402490 328 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AL358176.3-201ENST00000420757 454 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS39Q96JC1 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AL031584.1-201ENST00000447169 754 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 RHEBP2-201ENST00000450289 600 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 IFNWP4-201ENST00000453148 294 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 AL389915.2-201ENST00000454576 441 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 COPS8P2-201ENST00000473228 627 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC020890.1-201ENST00000491837 504 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC026688.1-201ENST00000520639 1168 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 OR7E10P-201ENST00000526420 991 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS39Q96JC1 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 HMGB3P26-201ENST00000560051 582 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 TVP23CP2-201ENST00000571473 623 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC005377.1-201ENST00000605126 456 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 MIR6729-201ENST00000618194 65 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 AC091046.3-201ENST00000631455 1574 ntBASIC4.93□□□□□ -1.62
VPS39Q96JC1 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS39Q96JC1 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS39Q96JC1 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS39Q96JC1 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
VPS39Q96JC1 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS39Q96JC1 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS39Q96JC1 SNORA51.1-201ENST00000363243 140 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC073464.3-201ENST00000422564 712 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 RPS26P4-201ENST00000431743 355 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 RPL34P20-201ENST00000442771 351 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 GEMIN8P3-201ENST00000445417 720 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 FAR2P1-206ENST00000449736 709 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 TPT1P1-201ENST00000458495 518 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AL591473.1-201ENST00000464297 313 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 MTND6P6-201ENST00000478031 263 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 RN7SL346P-201ENST00000491561 294 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 CDH12P2-201ENST00000504393 298 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC021146.7-201ENST00000509604 775 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 COX6B1P5-201ENST00000509843 249 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC138938.1-201ENST00000515431 782 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 RN7SKP46-201ENST00000515942 234 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 OR4V1P-201ENST00000525394 1140 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 OR7E128P-201ENST00000532736 1024 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 EIF1AXP2-201ENST00000555940 413 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC092868.3-201ENST00000560515 784 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC011447.4-201ENST00000587562 111 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS39Q96JC1 SUMO2P15-201ENST00000604285 278 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 AL391834.1-201ENST00000609609 560 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.92□□□□□ -1.62
VPS39Q96JC1 MIR8069-1-201ENST00000616627 86 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms