Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.08□□□□□ -1.6
VMP1Q96GC9 AC115085.1-201ENST00000588924 229 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.08□□□□□ -1.6
VMP1Q96GC9 FKBP1AP1-201ENST00000594588 318 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 AC009237.13-201ENST00000603193 276 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 IMMP1LP3-201ENST00000604197 224 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 AC009027.1-201ENST00000604510 479 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC5.08□□□□□ -1.6
VMP1Q96GC9 AC012467.1-201ENST00000607740 256 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 AL359513.1-201ENST00000614364 557 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 AC010435.1-201ENST00000623353 1177 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC5.08□□□□□ -1.6
VMP1Q96GC9 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.08□□□□□ -1.6
VMP1Q96GC9 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.08□□□□□ -1.6
VMP1Q96GC9 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
VMP1Q96GC9 USP9YP4-201ENST00000424401 1745 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
VMP1Q96GC9 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
VMP1Q96GC9 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
VMP1Q96GC9 AL359715.3-201ENST00000569267 2123 ntBASIC5.08□□□□□ -1.6
VMP1Q96GC9 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
VMP1Q96GC9 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 AL133268.1-201ENST00000405676 1401 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 RNA5SP335-201ENST00000363817 110 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 SNORD56.6-201ENST00000384569 71 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 RNU1-77P-201ENST00000390868 162 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 RPL21P67-201ENST00000402896 478 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 MTCO3P4-201ENST00000419236 787 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AL133325.1-201ENST00000421090 382 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 RPS11P7-201ENST00000442125 465 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 RPL7P31-201ENST00000450192 724 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AL513343.1-201ENST00000451818 792 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC011225.1-201ENST00000457751 369 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 RPS26P39-201ENST00000469206 341 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 AP000797.2-201ENST00000475768 606 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC093663.2-201ENST00000484625 313 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 RNU6-362P-201ENST00000516736 90 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC013701.1-201ENST00000522657 465 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 OR5AN2P-201ENST00000534535 896 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 POLR2KP1-201ENST00000553226 168 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 PRPF19P1-201ENST00000584766 898 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 SUMO2P15-201ENST00000604285 278 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC239803.2-201ENST00000610161 430 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC025016.1-201ENST00000616746 682 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 AC074101.1-201ENST00000637861 241 ntBASIC5.07□□□□□ -1.6
VMP1Q96GC9 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VMP1Q96GC9 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.07□□□□□ -1.6
VMP1Q96GC9 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC017079.1-201ENST00000333650 415 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 MIR133B-201ENST00000362210 119 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 RNU6-1279P-201ENST00000383917 103 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AP000534.2-201ENST00000412729 568 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AL450992.3-201ENST00000413192 568 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 SRSF1P1-201ENST00000424058 520 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 GSTM5P1-201ENST00000434751 660 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC074386.1-201ENST00000476560 767 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC104687.1-201ENST00000485829 412 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC109464.1-201ENST00000511091 819 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms