Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC073137.1-201ENST00000605636 634 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 AC099785.1-201ENST00000605697 437 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 RNU4-5P-201ENST00000607255 135 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 RNA5SP440-201ENST00000612665 119 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 AC127024.6-201ENST00000621598 424 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 AC008432.1-201ENST00000615912 1320 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 LINC01355-201ENST00000566551 5444 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 AL359715.4-201ENST00000606629 1436 ntBASIC4.89□□□□□ -1.63
CLIP4Q8N3C7 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 ZNF90P1-201ENST00000480493 1951 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RNA5SP335-201ENST00000363817 110 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RNU6-207P-201ENST00000384137 107 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RNY3P9-201ENST00000384727 106 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RNU6-796P-201ENST00000391086 107 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 HSPA8P15-201ENST00000401676 786 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 MTCO2P31-201ENST00000402702 684 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RPL10P10-201ENST00000403509 664 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC005005.2-201ENST00000420779 380 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AL160175.1-201ENST00000428124 247 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 GAPDHP34-201ENST00000432112 823 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RPS7P2-201ENST00000435134 607 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 GTF3AP5-201ENST00000442645 697 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AL161636.2-201ENST00000445179 927 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC104634.1-201ENST00000452720 462 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RPS27AP2-201ENST00000457576 465 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RPL21P47-201ENST00000483696 477 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RN7SL814P-201ENST00000487715 300 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC022133.1-201ENST00000490961 571 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 TPT1P3-201ENST00000492841 512 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 UGT2A3P7-201ENST00000510485 734 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RN7SKP34-201ENST00000516142 244 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RNA5SP373-201ENST00000517271 95 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC104229.1-201ENST00000561364 255 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 RBPJP2-201ENST00000618187 1444 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 Z95327.2-201ENST00000414579 1873 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 NEAT1-202ENST00000501122 22743 ntBASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLIP4Q8N3C7 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 RN7SKP124-201ENST00000364730 341 ntBASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 RN7SKP153-201ENST00000365026 316 ntBASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 AL031985.1-201ENST00000392713 418 ntBASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.87□□□□□ -1.63
CLIP4Q8N3C7 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms