Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL035405.1-201ENST00000400795 710 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC009804.1-201ENST00000400949 179 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 RN7SKP27-201ENST00000410684 333 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AL357752.1-201ENST00000412817 349 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 OR6E1P-201ENST00000414424 923 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AL596448.1-201ENST00000415024 392 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 SLC35E1P1-201ENST00000419313 864 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC245028.1-201ENST00000423259 256 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC127526.2-201ENST00000426436 775 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AL158073.1-201ENST00000426848 1104 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 C4BPAP2-201ENST00000428434 478 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 ELOCP10-201ENST00000440624 327 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC073465.2-201ENST00000440938 498 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC023512.1-201ENST00000444513 499 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 RN7SL481P-201ENST00000477764 299 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC091912.1-201ENST00000511351 248 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AP001922.4-201ENST00000526967 290 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC068714.1-201ENST00000559623 800 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 MIR4311-201ENST00000580794 100 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AP005262.1-201ENST00000582646 997 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 MIR4660-201ENST00000583549 74 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 H3F3BP2-201ENST00000583907 357 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC011458.1-201ENST00000604034 617 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 ELOCP34-201ENST00000604436 327 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AP005229.2-201ENST00000609980 697 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AL391834.2-201ENST00000609982 546 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC090607.5-201ENST00000615692 224 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 uc_338.7-201ENST00000621834 124 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC007683.2-201ENST00000624681 714 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC087565.3-203ENST00000641018 837 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.69
PDLIM3Q53GG5 CASC19-221ENST00000641309 1382 ntBASIC4.53□□□□□ -1.69
PDLIM3Q53GG5 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC093591.2-201ENST00000565254 3843 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 RNU6-481P-201ENST00000384194 107 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 MIR142-201ENST00000384835 87 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC013442.1-201ENST00000397347 228 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC010385.1-201ENST00000412374 256 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 RPL35AP24-201ENST00000413846 330 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AL158050.1-201ENST00000416077 457 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 CYP4F29P-201ENST00000420685 446 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AL160175.1-201ENST00000428124 247 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC126120.1-201ENST00000431082 470 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 RPL12P46-201ENST00000436610 195 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC092013.1-201ENST00000438795 332 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 TPT1P12-201ENST00000448968 492 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms