Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.17□□□□□ -1.74
CHD3Q12873 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 RNU1-85P-201ENST00000364127 164 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CHD3Q12873 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CHD3Q12873 ARL4AP5-201ENST00000404372 599 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.17□□□□□ -1.74
CHD3Q12873 ELOCP19-201ENST00000411919 318 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 AL591848.1-201ENST00000413092 322 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.17□□□□□ -1.74
CHD3Q12873 AL359265.2-201ENST00000434367 631 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 ARL2BPP10-201ENST00000446487 531 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 OR52J1P-201ENST00000450596 932 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 RPL7P32-201ENST00000457119 744 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 AC109327.1-201ENST00000471666 403 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.17□□□□□ -1.74
CHD3Q12873 GOLGA5P1-201ENST00000507317 980 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 RNA5SP143-201ENST00000516936 115 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.17□□□□□ -1.74
CHD3Q12873 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.17□□□□□ -1.74
CHD3Q12873 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.17□□□□□ -1.74
CHD3Q12873 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 AL353600.1-201ENST00000608148 251 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CHD3Q12873 AC087821.1-201ENST00000623639 567 ntBASIC4.17□□□□□ -1.74
CHD3Q12873 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CHD3Q12873 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CHD3Q12873 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.17□□□□□ -1.74
CHD3Q12873 AL022393.1-201ENST00000625142 1677 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AL137100.1-201ENST00000556703 1620 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AL034370.1-201ENST00000397254 1590 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AL672167.1-205ENST00000641112 3080 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CHD3Q12873 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.16□□□□□ -1.74
CHD3Q12873 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 RN7SKP227-201ENST00000364445 330 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 SNORA70.10-201ENST00000384515 134 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 RNU4-25P-201ENST00000410569 230 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 CKS1BP6-201ENST00000424932 240 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.16□□□□□ -1.74
CHD3Q12873 RPS26P4-201ENST00000431743 355 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.16□□□□□ -1.74
CHD3Q12873 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 AURKAPS2-201ENST00000454983 333 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 SEPT7P3-201ENST00000455017 621 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AC022034.3-201ENST00000471393 478 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.16□□□□□ -1.74
CHD3Q12873 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 AC090181.2-201ENST00000602975 672 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AL133338.2-201ENST00000604292 736 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AL139041.1-201ENST00000605480 610 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AC243960.7-201ENST00000623532 707 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 IPO5-229ENST00000631030 192 ntTSL 5 BASIC4.16□□□□□ -1.74
CHD3Q12873 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CHD3Q12873 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CHD3Q12873 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CHD3Q12873 SCARNA15-201ENST00000607520 4325 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 SAMMSON-226ENST00000642089 1582 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 DHX9P1-201ENST00000436565 3076 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CHD3Q12873 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CHD3Q12873 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.16□□□□□ -1.74
CHD3Q12873 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 OR2AH1P-201ENST00000425717 928 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 NRBF2P3-201ENST00000432731 865 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AC073587.1-201ENST00000447093 876 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AC093840.1-201ENST00000511599 336 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 RNA5SP303-201ENST00000516192 130 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 RN7SKP276-201ENST00000516242 268 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.16□□□□□ -1.74
CHD3Q12873 AGGF1P9-201ENST00000561884 913 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 DPRXP4-201ENST00000578053 568 ntBASIC4.16□□□□□ -1.74
CHD3Q12873 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CHD3Q12873 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.16□□□□□ -1.74
CHD3Q12873 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.16□□□□□ -1.74
CHD3Q12873 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.15□□□□□ -1.74
CHD3Q12873 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CHD3Q12873 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CHD3Q12873 MTCO1P15-201ENST00000529569 1526 ntBASIC4.15□□□□□ -1.74
CHD3Q12873 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.15□□□□□ -1.74
CHD3Q12873 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
CHD3Q12873 AL672167.1-203ENST00000641299 2975 ntBASIC4.15□□□□□ -1.74
CHD3Q12873 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CHD3Q12873 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.15□□□□□ -1.74
CHD3Q12873 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CHD3Q12873 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CHD3Q12873 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms