Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
EPHB3P54753 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
EPHB3P54753 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
EPHB3P54753 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
EPHB3P54753 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
EPHB3P54753 AC092447.7-201ENST00000422212 1621 ntBASIC6.21□□□□□ -1.42
EPHB3P54753 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.21□□□□□ -1.42
EPHB3P54753 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
EPHB3P54753 THAP12P9-201ENST00000503971 2360 ntBASIC6.21□□□□□ -1.42
EPHB3P54753 AL161901.1-201ENST00000624954 3425 ntBASIC6.21□□□□□ -1.42
EPHB3P54753 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.21□□□□□ -1.42
EPHB3P54753 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.21□□□□□ -1.42
EPHB3P54753 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.21□□□□□ -1.42
EPHB3P54753 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.2□□□□□ -1.42
EPHB3P54753 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
EPHB3P54753 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 RNA5SP211-201ENST00000365516 117 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.2□□□□□ -1.42
EPHB3P54753 Y_RNA.465-201ENST00000384293 102 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 SNORA40.2-201ENST00000390847 128 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 MIR548F1-201ENST00000408667 84 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 RN7SKP33-201ENST00000410942 340 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 RN7SKP29-201ENST00000410957 272 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 RNU4-74P-201ENST00000411280 161 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC6.2□□□□□ -1.42
EPHB3P54753 MRPL53P1-201ENST00000414323 319 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 RWDD4P2-201ENST00000426392 563 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 RPL34P27-201ENST00000428810 349 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC6.2□□□□□ -1.42
EPHB3P54753 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC6.2□□□□□ -1.42
EPHB3P54753 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 DEFA9P-201ENST00000433042 285 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.2□□□□□ -1.42
EPHB3P54753 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
EPHB3P54753 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC6.2□□□□□ -1.42
EPHB3P54753 AP000281.1-201ENST00000444036 316 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 ACA64.4-201ENST00000459070 127 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC104849.1-201ENST00000462623 405 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 RPL31P58-201ENST00000469001 379 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC074386.1-201ENST00000476560 767 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC6.2□□□□□ -1.42
EPHB3P54753 AC096751.1-202ENST00000502691 1067 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC113347.3-201ENST00000509113 148 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 CYP4F27P-201ENST00000514557 494 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.2□□□□□ -1.42
EPHB3P54753 TBCA-206ENST00000518338 551 ntTSL 2 BASIC6.2□□□□□ -1.42
EPHB3P54753 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC6.2□□□□□ -1.42
EPHB3P54753 UBE2NP1-201ENST00000545592 458 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC6.2□□□□□ -1.42
EPHB3P54753 AC084757.1-201ENST00000559987 490 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AADACP1-206ENST00000561502 1193 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 TXNP4-201ENST00000575018 310 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 ANKRD36BP2-206ENST00000575193 1245 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC011260.1-201ENST00000578420 472 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 MIR4260-201ENST00000583107 67 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC6.2□□□□□ -1.42
EPHB3P54753 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.2□□□□□ -1.42
EPHB3P54753 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC6.2□□□□□ -1.42
EPHB3P54753 RN7SL544P-201ENST00000617232 284 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 RN7SL763P-201ENST00000620922 284 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC6.2□□□□□ -1.42
EPHB3P54753 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC6.2□□□□□ -1.42
EPHB3P54753 OR5AK4P-201ENST00000635912 903 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.2□□□□□ -1.42
EPHB3P54753 AC099654.12-201ENST00000639868 649 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 AC087565.3-203ENST00000641018 837 ntBASIC6.2□□□□□ -1.42
EPHB3P54753 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.2□□□□□ -1.42
EPHB3P54753 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
EPHB3P54753 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.2□□□□□ -1.42
EPHB3P54753 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
EPHB3P54753 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
EPHB3P54753 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
EPHB3P54753 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
EPHB3P54753 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.19□□□□□ -1.42
EPHB3P54753 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
EPHB3P54753 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
EPHB3P54753 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
EPHB3P54753 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
EPHB3P54753 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
EPHB3P54753 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.19□□□□□ -1.42
EPHB3P54753 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
EPHB3P54753 AL391994.1-201ENST00000254724 282 ntBASIC6.19□□□□□ -1.42
EPHB3P54753 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
EPHB3P54753 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
EPHB3P54753 U3.25-201ENST00000391209 220 ntBASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 9.8 ms