Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.58□□□□□ -1.52
MSX2P35548 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 DNAJA1P2-201ENST00000421360 1197 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 AC094019.1-201ENST00000434678 472 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 AC093716.1-201ENST00000435923 377 ntBASIC5.58□□□□□ -1.52
MSX2P35548 PA2G4P6-201ENST00000438325 1197 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AL663074.2-201ENST00000440621 479 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC015983.1-201ENST00000441577 373 ntBASIC5.58□□□□□ -1.52
MSX2P35548 POU5F1P5-201ENST00000445059 658 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
MSX2P35548 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 RN7SL197P-201ENST00000466981 299 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC006539.1-201ENST00000481419 501 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RN7SL741P-201ENST00000482473 289 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RPL9P33-201ENST00000484311 566 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 AC113430.1-201ENST00000506872 718 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 MTATP6P22-201ENST00000507369 598 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RNA5SP434-201ENST00000516647 121 ntBASIC5.58□□□□□ -1.52
MSX2P35548 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.58□□□□□ -1.52
MSX2P35548 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.58□□□□□ -1.52
MSX2P35548 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.58□□□□□ -1.52
MSX2P35548 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.58□□□□□ -1.52
MSX2P35548 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 AC027104.1-201ENST00000563702 681 ntBASIC5.58□□□□□ -1.52
MSX2P35548 CYP2C60P-201ENST00000566088 139 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.58□□□□□ -1.52
MSX2P35548 MIR5708-201ENST00000579723 85 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RN7SL32P-201ENST00000580514 281 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC134669.1-201ENST00000581275 672 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC068020.1-201ENST00000594215 661 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RPL7AP69-201ENST00000595306 806 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC130352.1-201ENST00000602979 661 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC006270.3-201ENST00000605967 1036 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AL031775.1-201ENST00000607014 887 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC138749.5-201ENST00000611461 208 ntBASIC5.58□□□□□ -1.52
MSX2P35548 DLEU2_1.1-201ENST00000612089 120 ntBASIC5.58□□□□□ -1.52
MSX2P35548 DLEU2_1.2-201ENST00000614667 120 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC096861.1-201ENST00000616652 240 ntBASIC5.58□□□□□ -1.52
MSX2P35548 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 AL356266.1-201ENST00000623311 483 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC010435.1-201ENST00000623353 1177 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RPL23AP61-201ENST00000623642 466 ntBASIC5.58□□□□□ -1.52
MSX2P35548 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
MSX2P35548 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSX2P35548 VN2R3P-201ENST00000422626 1412 ntBASIC5.57□□□□□ -1.52
MSX2P35548 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
MSX2P35548 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSX2P35548 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX2P35548 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX2P35548 RN7SKP145-201ENST00000363291 303 ntBASIC5.57□□□□□ -1.52
MSX2P35548 U3.4-201ENST00000363352 213 ntBASIC5.57□□□□□ -1.52
MSX2P35548 RNY3P14-201ENST00000384309 102 ntBASIC5.57□□□□□ -1.52
MSX2P35548 MIR551B-201ENST00000384984 96 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC099535.1-201ENST00000408928 371 ntBASIC5.57□□□□□ -1.52
MSX2P35548 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 RN7SKP142-201ENST00000411236 328 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 CDK8P2-201ENST00000415020 547 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AL139421.1-201ENST00000423010 169 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC009784.1-201ENST00000426484 460 ntBASIC5.57□□□□□ -1.52
MSX2P35548 DPPA2P1-201ENST00000428060 556 ntBASIC5.57□□□□□ -1.52
MSX2P35548 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSX2P35548 OR2B8P-201ENST00000432841 938 ntBASIC5.57□□□□□ -1.52
MSX2P35548 NPM1P18-201ENST00000434232 732 ntBASIC5.57□□□□□ -1.52
MSX2P35548 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC023271.1-201ENST00000445936 1090 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms