Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MTCYBP14-201ENST00000457471 715 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 F11-205ENST00000492972 1204 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXC9P31274 RN7SL810P-201ENST00000493031 276 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC9P31274 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC6.11□□□□□ -1.43
HOXC9P31274 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.11□□□□□ -1.43
HOXC9P31274 SNRPGP1-201ENST00000553864 222 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC9P31274 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 CYCSP40-201ENST00000575927 294 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC9P31274 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC9P31274 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC6.11□□□□□ -1.43
HOXC9P31274 AP001160.4-201ENST00000596971 382 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.43
HOXC9P31274 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXC9P31274 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
HOXC9P31274 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXC9P31274 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 AL391684.1-202ENST00000641293 1636 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXC9P31274 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
HOXC9P31274 AC022893.2-201ENST00000564832 3296 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
HOXC9P31274 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
HOXC9P31274 AC104333.2-201ENST00000422630 192 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 EIF4HP2-201ENST00000424380 563 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC6.1□□□□□ -1.43
HOXC9P31274 MTCYBP21-201ENST00000443300 1113 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 RAD1P2-201ENST00000446414 663 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 RN7SL98P-201ENST00000462271 300 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
HOXC9P31274 AC112184.1-201ENST00000505179 312 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC6.1□□□□□ -1.43
HOXC9P31274 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
HOXC9P31274 BNIP3P5-201ENST00000562290 498 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXC9P31274 BX322635.1-201ENST00000605804 496 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 AC012467.1-201ENST00000607740 256 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXC9P31274 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
HOXC9P31274 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXC9P31274 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
HOXC9P31274 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXC9P31274 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.1□□□□□ -1.43
HOXC9P31274 AC092376.2-201ENST00000622621 4116 ntBASIC6.1□□□□□ -1.43
HOXC9P31274 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
HOXC9P31274 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXC9P31274 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
HOXC9P31274 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
HOXC9P31274 ZNF92P1Y-201ENST00000415010 1191 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 RANP7-201ENST00000418085 644 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AC012519.1-201ENST00000424588 610 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 SCP2-206ENST00000430330 938 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXC9P31274 AC004938.1-201ENST00000438468 308 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HOXC9P31274 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXC9P31274 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXC9P31274 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXC9P31274 MTND2P31-201ENST00000512602 616 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AC026402.1-201ENST00000513642 170 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HOXC9P31274 NPM1P5-201ENST00000557228 838 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXC9P31274 AC127024.5-201ENST00000580085 462 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AC011477.5-201ENST00000586571 259 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXC9P31274 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXC9P31274 ARF4P1-201ENST00000605447 541 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXC9P31274 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AC015804.1-201ENST00000622935 435 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 AP001153.1-201ENST00000641024 338 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 OR2L1P-202ENST00000641567 1023 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXC9P31274 AC090220.1-201ENST00000593078 1699 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HOXC9P31274 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXC9P31274 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXC9P31274 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
HOXC9P31274 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXC9P31274 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXC9P31274 AL445487.1-201ENST00000415694 1580 ntBASIC6.09□□□□□ -1.43
HOXC9P31274 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXC9P31274 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXC9P31274 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
HOXC9P31274 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
HOXC9P31274 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms