Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.08□□□□□ -1.44
SMARCA1P28370 HIGD1AP14-201ENST00000507617 282 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC108120.2-201ENST00000512973 294 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 AC098976.1-201ENST00000513014 541 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC022832.1-201ENST00000530718 645 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC011447.4-201ENST00000587562 111 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC234772.3-201ENST00000602277 528 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 AC106052.1-201ENST00000608029 497 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC074140.1-201ENST00000621617 208 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC6.08□□□□□ -1.44
SMARCA1P28370 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC132825.7-201ENST00000638744 335 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 HSPD1P11-201ENST00000508643 1702 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 AL121839.2-201ENST00000565058 6943 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SMARCA1P28370 SMG1P7-201ENST00000565246 2704 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
SMARCA1P28370 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SMARCA1P28370 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 MIR589-201ENST00000385238 99 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 EI24P4-201ENST00000423683 1078 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SMARCA1P28370 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC6.07□□□□□ -1.44
SMARCA1P28370 AL627308.1-201ENST00000435693 821 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC6.07□□□□□ -1.44
SMARCA1P28370 AC023512.1-201ENST00000444513 499 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC6.07□□□□□ -1.44
SMARCA1P28370 RN7SL799P-201ENST00000475891 298 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 MTCYBP35-201ENST00000503630 1137 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 RNA5SP92-201ENST00000516437 110 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 MAL2-208ENST00000523307 556 ntTSL 4 BASIC6.07□□□□□ -1.44
SMARCA1P28370 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC6.07□□□□□ -1.44
SMARCA1P28370 AP000859.1-201ENST00000525536 307 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC6.07□□□□□ -1.44
SMARCA1P28370 DUXAP5-201ENST00000529668 529 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.07□□□□□ -1.44
SMARCA1P28370 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC6.07□□□□□ -1.44
SMARCA1P28370 HAUS8P1-201ENST00000549005 542 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 AC012254.4-201ENST00000588843 273 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 AC011626.1-201ENST00000604710 562 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC6.07□□□□□ -1.44
SMARCA1P28370 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SMARCA1P28370 Z99129.2-201ENST00000619967 314 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC6.07□□□□□ -1.44
SMARCA1P28370 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SMARCA1P28370 AC133552.1-201ENST00000569988 4007 ntBASIC6.07□□□□□ -1.44
SMARCA1P28370 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SMARCA1P28370 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMARCA1P28370 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMARCA1P28370 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.06□□□□□ -1.44
SMARCA1P28370 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMARCA1P28370 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
SMARCA1P28370 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMARCA1P28370 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
SMARCA1P28370 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMARCA1P28370 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMARCA1P28370 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
SMARCA1P28370 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMARCA1P28370 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
SMARCA1P28370 OR1L6-202ENST00000373684 1044 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 RN7SKP273-201ENST00000411392 314 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 AC010385.1-201ENST00000412374 256 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 TRIM60P5Y-201ENST00000413946 574 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SMARCA1P28370 XKRYP1-201ENST00000423438 492 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC6.06□□□□□ -1.44
SMARCA1P28370 AL136231.1-201ENST00000429407 730 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 XKRYP2-201ENST00000432915 492 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 OR10R1P-201ENST00000441524 1141 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 AL358794.1-201ENST00000445689 381 ntBASIC6.06□□□□□ -1.44
SMARCA1P28370 FAR2P1-206ENST00000449736 709 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms