Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC004825.1-201ENST00000555068 586 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 GLRXP2-201ENST00000555594 321 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AL390334.1-201ENST00000556395 450 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC084759.1-201ENST00000561168 290 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC007448.1-201ENST00000582714 234 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC133794.1-201ENST00000602731 914 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC084373.1-201ENST00000603311 235 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC026741.1-201ENST00000605892 482 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 SDR42E1P1-201ENST00000611327 477 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC007204.2-201ENST00000615022 616 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AP000943.4-201ENST00000622912 357 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC010872.1-201ENST00000624225 675 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 ZNF90P1-201ENST00000480493 1951 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
NKX3-1Q99801 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
NKX3-1Q99801 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
NKX3-1Q99801 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
NKX3-1Q99801 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
NKX3-1Q99801 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 RNA5SP487-201ENST00000410186 122 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 XKRYP4-201ENST00000414395 483 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AL158825.1-201ENST00000414735 521 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 OR5M12P-201ENST00000423388 929 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 RPL23AP4-201ENST00000427757 463 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 XKRYP5-201ENST00000449659 483 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC037198.2-201ENST00000478845 733 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 RPL7P39-201ENST00000481157 744 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 RN7SL591P-201ENST00000496150 292 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC093801.2-201ENST00000503966 1050 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC121161.1-201ENST00000510606 652 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC090022.1-201ENST00000546569 311 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC090330.1-201ENST00000588646 764 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AP003117.1-201ENST00000602771 554 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 SUGT1P3-202ENST00000604259 383 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 SUMO2P15-201ENST00000604285 278 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 SUMO2P14-201ENST00000604488 293 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC105148.1-201ENST00000604961 409 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AL391834.2-201ENST00000609982 546 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC118658.2-201ENST00000618697 459 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
NKX3-1Q99801 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 SAMMSON-209ENST00000641222 1100 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC006210.2-201ENST00000367074 1545 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 SAMMSON-213ENST00000641336 1521 ntBASIC4.45□□□□□ -1.7
NKX3-1Q99801 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
NKX3-1Q99801 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
NKX3-1Q99801 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
NKX3-1Q99801 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NKX3-1Q99801 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms