Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU6-714P-201ENST00000516963 103 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 MIR4800-201ENST00000537353 80 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 FAM30C-201ENST00000561158 410 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL845331.3-202ENST00000562856 261 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 RN7SL366P-201ENST00000577957 292 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC011840.5-201ENST00000582125 771 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL121782.1-201ENST00000611242 413 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 Y_RNA.804-201ENST00000615262 101 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AP005212.3-201ENST00000619964 528 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC129778.1-202ENST00000623812 261 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL683826.1-201ENST00000624104 627 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC008626.2-201ENST00000624425 248 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL591379.1-207ENST00000635982 261 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC010149.2-201ENST00000637608 315 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 SSXP3-201ENST00000442971 1300 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 KPNA2P2-201ENST00000419546 1489 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 FGF7P8-201ENST00000402994 292 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 MRPL42P2-201ENST00000403169 426 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AL451061.1-201ENST00000407887 862 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 RN7SKP271-201ENST00000410528 320 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 RN7SKP137-201ENST00000411074 307 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 RNA5SP280-201ENST00000411230 115 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC127391.1-201ENST00000411737 98 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AL662791.3-201ENST00000413771 776 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC018804.1-201ENST00000430381 618 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 MTCO3P18-201ENST00000440206 761 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 CEACAMP5-201ENST00000448037 961 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AL157400.2-201ENST00000454174 563 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 SRP68P2-201ENST00000456184 254 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 RPL7P15-201ENST00000461190 712 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 PLGLA-201ENST00000465668 449 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 RPL5P12-201ENST00000477071 851 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 RN7SKP11-201ENST00000517018 287 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 IGKV1D-32-201ENST00000517449 318 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 IGHVIII-25-1-201ENST00000522143 241 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 OR8Q1P-201ENST00000526467 655 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 SSU72P6-201ENST00000532644 488 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC007537.1-201ENST00000539347 327 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 NXPE2P1-201ENST00000543705 726 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC034268.2-201ENST00000571784 482 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 SNORA70D-201ENST00000578836 135 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms