Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 MTND5P23-201ENST00000430812 1655 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 MSL3P1-202ENST00000440028 1468 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 SNURFL-201ENST00000309296 343 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 RN7SKP186-201ENST00000365371 303 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CNOT7P1-201ENST00000429006 852 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 ZNF886P-201ENST00000450781 723 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 RPL7L1P3-201ENST00000455249 689 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 RPS20P4-201ENST00000461659 355 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 RPS4XP20-201ENST00000505751 772 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC113420.1-201ENST00000507903 571 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC093752.1-206ENST00000511823 336 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC079064.1-201ENST00000528365 362 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CASP1-216ENST00000534497 825 ntTSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CSNK1A1P1-202ENST00000563423 981 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC009117.1-201ENST00000563948 554 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AL132657.2-201ENST00000564417 358 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC023824.3-201ENST00000569003 562 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 GAS5-AS1-201ENST00000602767 694 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC092653.1-201ENST00000608509 531 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC019193.2-201ENST00000610012 634 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 AC021755.4-201ENST00000616620 456 ntBASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMC1BQ8NDV3 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC110373.1-201ENST00000505994 3505 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 NXF4-202ENST00000416098 1465 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 RNU1-59P-201ENST00000364829 162 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 ATP5HP3-201ENST00000396994 486 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC233289.1-201ENST00000403700 508 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 RN7SKP97-201ENST00000410966 333 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 TMA16P2-201ENST00000413187 601 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 RPL22P18-201ENST00000417197 377 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 RPS17P17-201ENST00000419392 409 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC093716.1-201ENST00000435923 377 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC079203.1-201ENST00000487972 404 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC134050.1-201ENST00000495088 933 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 HMGB1P23-201ENST00000518743 568 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC008126.1-201ENST00000549019 480 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 RN7SL622P-201ENST00000585292 275 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AL162431.4-201ENST00000604674 411 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms