Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNU6-468P-201ENST00000384003 109 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 RNU6-171P-201ENST00000384354 107 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 RNU6-1263P-201ENST00000384601 106 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 MIR223-201ENST00000385204 110 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 MT-TP-201ENST00000387461 68 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 AL035079.1-201ENST00000405210 287 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 RN7SKP16-201ENST00000410180 299 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 RN7SKP126-201ENST00000411143 300 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.35□□□□□ -1.55
PTPN9P43378 COX6CP13-201ENST00000428703 226 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 NDUFA5P10-201ENST00000432147 357 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 KNOP1P3-201ENST00000446933 426 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 SEPT7P3-201ENST00000455017 621 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 AC018638.3-201ENST00000461273 132 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 RPS17P11-201ENST00000474297 293 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 RN7SL441P-201ENST00000492388 296 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 OR5H3P-201ENST00000502817 919 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 SNRPCP2-201ENST00000504370 475 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.35□□□□□ -1.55
PTPN9P43378 BTG4P1-201ENST00000510421 183 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.35□□□□□ -1.55
PTPN9P43378 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.35□□□□□ -1.55
PTPN9P43378 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.35□□□□□ -1.55
PTPN9P43378 IGHV3-63-201ENST00000518422 341 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.35□□□□□ -1.55
PTPN9P43378 AP003066.2-201ENST00000529375 555 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 AC087894.1-201ENST00000538359 518 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 AC006349.1-201ENST00000555526 235 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 CD24P2-201ENST00000565486 219 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.35□□□□□ -1.55
PTPN9P43378 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.35□□□□□ -1.55
PTPN9P43378 AC078880.5-201ENST00000617845 421 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.35□□□□□ -1.55
PTPN9P43378 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.35□□□□□ -1.55
PTPN9P43378 AC099494.2-201ENST00000623371 978 ntBASIC5.35□□□□□ -1.55
PTPN9P43378 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5.35□□□□□ -1.55
PTPN9P43378 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.35□□□□□ -1.55
PTPN9P43378 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PTPN9P43378 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PTPN9P43378 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PTPN9P43378 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PTPN9P43378 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PTPN9P43378 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.34□□□□□ -1.55
PTPN9P43378 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
PTPN9P43378 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PTPN9P43378 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.34□□□□□ -1.55
PTPN9P43378 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTPN9P43378 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTPN9P43378 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
PTPN9P43378 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTPN9P43378 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTPN9P43378 SNORA2.3-201ENST00000383920 135 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 MIR137-201ENST00000385223 102 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 RNU6-796P-201ENST00000391086 107 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTPN9P43378 RPL22P22-201ENST00000395439 379 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AL355615.1-201ENST00000406187 641 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 U3.32-201ENST00000408116 212 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 RNA5SP296-201ENST00000410523 111 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 XKRYP4-201ENST00000414395 483 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.34□□□□□ -1.55
PTPN9P43378 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.34□□□□□ -1.55
PTPN9P43378 MTCO1P43-201ENST00000431831 488 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AC006994.1-201ENST00000438212 839 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 RPL7AP61-201ENST00000443410 636 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AL606517.1-201ENST00000446914 387 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 XKRYP5-201ENST00000449659 483 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 HMGB1P5-202ENST00000451497 985 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 RN7SL443P-201ENST00000464331 290 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 NIFKP7-201ENST00000503365 834 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 HIGD1AP14-201ENST00000507617 282 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.34□□□□□ -1.55
PTPN9P43378 AC133963.2-201ENST00000513686 578 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.34□□□□□ -1.55
PTPN9P43378 CIR1P1-201ENST00000524055 1133 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AP002373.2-201ENST00000541631 1060 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC5.34□□□□□ -1.55
PTPN9P43378 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.34□□□□□ -1.55
PTPN9P43378 LSM3P2-201ENST00000551246 273 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AL049870.4-201ENST00000555741 486 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.34□□□□□ -1.55
PTPN9P43378 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC5.34□□□□□ -1.55
PTPN9P43378 AC127024.5-201ENST00000580085 462 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 MIR1269B-201ENST00000580405 75 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AC011447.4-201ENST00000587562 111 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.34□□□□□ -1.55
PTPN9P43378 AC023762.1-201ENST00000603280 584 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AC027449.1-201ENST00000608890 407 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AL050303.3-201ENST00000613704 284 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC5.34□□□□□ -1.55
PTPN9P43378 AC073342.3-201ENST00000624211 193 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 AC010608.3-201ENST00000625048 527 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.34□□□□□ -1.55
PTPN9P43378 AC011755.1-201ENST00000623763 2049 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 ADAM5-202ENST00000399789 1942 ntBASIC5.34□□□□□ -1.55
PTPN9P43378 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
PTPN9P43378 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.34□□□□□ -1.55
PTPN9P43378 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PTPN9P43378 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PTPN9P43378 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms