Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC010503.3-201ENST00000594355 540 ntBASIC5.68□□□□□ -1.5
CIITAP33076 AC010487.1-201ENST00000594408 1172 ntBASIC5.68□□□□□ -1.5
CIITAP33076 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC5.68□□□□□ -1.5
CIITAP33076 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CIITAP33076 AC105105.5-201ENST00000622635 1294 ntBASIC5.68□□□□□ -1.5
CIITAP33076 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC5.68□□□□□ -1.5
CIITAP33076 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CIITAP33076 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CIITAP33076 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CIITAP33076 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CIITAP33076 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CIITAP33076 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.68□□□□□ -1.5
CIITAP33076 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CIITAP33076 AC092376.2-201ENST00000622621 4116 ntBASIC5.67□□□□□ -1.5
CIITAP33076 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
CIITAP33076 MTCO1P4-201ENST00000520516 1409 ntBASIC5.67□□□□□ -1.5
CIITAP33076 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
CIITAP33076 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.67□□□□□ -1.5
CIITAP33076 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.67□□□□□ -1.5
CIITAP33076 AC131971.1-201ENST00000332881 1482 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.67□□□□□ -1.5
CIITAP33076 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 SNORA51.8-201ENST00000384234 132 ntBASIC5.67□□□□□ -1.5
CIITAP33076 SNORA11B-201ENST00000408175 129 ntBASIC5.67□□□□□ -1.5
CIITAP33076 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC5.67□□□□□ -1.5
CIITAP33076 CHEK2P3-201ENST00000416118 248 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.67□□□□□ -1.5
CIITAP33076 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC5.67□□□□□ -1.5
CIITAP33076 AC093084.1-201ENST00000424233 687 ntBASIC5.67□□□□□ -1.5
CIITAP33076 NPM1P22-201ENST00000427761 952 ntBASIC5.67□□□□□ -1.5
CIITAP33076 ZNF965P-201ENST00000432501 817 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.67□□□□□ -1.5
CIITAP33076 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.67□□□□□ -1.5
CIITAP33076 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.67□□□□□ -1.5
CIITAP33076 AC007000.2-201ENST00000442564 487 ntBASIC5.67□□□□□ -1.5
CIITAP33076 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 RPL7P61-201ENST00000451721 751 ntBASIC5.67□□□□□ -1.5
CIITAP33076 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.67□□□□□ -1.5
CIITAP33076 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 MTCO2P9-201ENST00000503214 694 ntBASIC5.67□□□□□ -1.5
CIITAP33076 NIFKP7-201ENST00000503365 834 ntBASIC5.67□□□□□ -1.5
CIITAP33076 NDUFB5P1-201ENST00000508134 564 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.67□□□□□ -1.5
CIITAP33076 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.67□□□□□ -1.5
CIITAP33076 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC5.67□□□□□ -1.5
CIITAP33076 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.67□□□□□ -1.5
CIITAP33076 AL358913.1-201ENST00000554342 121 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AC092868.3-201ENST00000560515 784 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AC116553.2-201ENST00000564203 463 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.67□□□□□ -1.5
CIITAP33076 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
CIITAP33076 AC005377.1-201ENST00000605126 456 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AL158050.2-201ENST00000605336 568 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AC034236.3-201ENST00000605999 461 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AC004775.1-201ENST00000607389 753 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AC112503.2-201ENST00000609005 552 ntBASIC5.67□□□□□ -1.5
CIITAP33076 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.67□□□□□ -1.5
CIITAP33076 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.67□□□□□ -1.5
CIITAP33076 AL445984.1-201ENST00000637834 659 ntBASIC5.67□□□□□ -1.5
CIITAP33076 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CIITAP33076 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
CIITAP33076 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.67□□□□□ -1.5
CIITAP33076 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CIITAP33076 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.67□□□□□ -1.5
CIITAP33076 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
CIITAP33076 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.67□□□□□ -1.5
CIITAP33076 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CIITAP33076 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
CIITAP33076 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CIITAP33076 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CIITAP33076 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CIITAP33076 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
CIITAP33076 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.66□□□□□ -1.5
CIITAP33076 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.66□□□□□ -1.5
CIITAP33076 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CIITAP33076 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.66□□□□□ -1.5
CIITAP33076 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CIITAP33076 RNU6-792P-201ENST00000363490 107 ntBASIC5.66□□□□□ -1.5
CIITAP33076 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CIITAP33076 AC013442.1-201ENST00000397347 228 ntBASIC5.66□□□□□ -1.5
CIITAP33076 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
CIITAP33076 HMGB3P7-201ENST00000400214 611 ntBASIC5.66□□□□□ -1.5
CIITAP33076 RPL21P67-201ENST00000402896 478 ntBASIC5.66□□□□□ -1.5
CIITAP33076 STAT4-203ENST00000409995 709 ntTSL 5 BASIC5.66□□□□□ -1.5
CIITAP33076 AC069282.1-201ENST00000411911 526 ntBASIC5.66□□□□□ -1.5
CIITAP33076 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.66□□□□□ -1.5
CIITAP33076 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.66□□□□□ -1.5
CIITAP33076 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.66□□□□□ -1.5
CIITAP33076 RPL12P3-201ENST00000440080 396 ntBASIC5.66□□□□□ -1.5
CIITAP33076 AL137845.2-201ENST00000444292 988 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms