Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXC9P31274 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXC9P31274 CYCSP34-201ENST00000458172 304 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXC9P31274 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
HOXC9P31274 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC9P31274 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXC9P31274 AC087272.1-201ENST00000523624 533 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXC9P31274 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXC9P31274 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC9P31274 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXC9P31274 AC092653.1-201ENST00000608509 531 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 OR8G7P-201ENST00000616658 848 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC9P31274 FTO-223ENST00000640179 210 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXC9P31274 DDX18P5-201ENST00000534547 1306 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
HOXC9P31274 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC9P31274 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXC9P31274 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXC9P31274 AL034370.1-201ENST00000397254 1590 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC9P31274 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 RNU4-23P-201ENST00000362839 140 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC9P31274 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXC9P31274 RN7SL303P-201ENST00000469773 251 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC9P31274 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXC9P31274 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXC9P31274 CYCSP29-201ENST00000533731 318 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.13□□□□□ -1.43
HOXC9P31274 AC067805.1-201ENST00000559344 470 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 AC087477.6-201ENST00000559595 843 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 AC090286.3-201ENST00000573133 187 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 BNIP3P7-201ENST00000605641 516 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC9P31274 AL118508.4-201ENST00000624142 1176 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 AP000843.1-201ENST00000624880 701 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 AP000756.2-201ENST00000624168 2567 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXC9P31274 STX3-208ENST00000641815 3236 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 AL731566.1-201ENST00000620490 1937 ntBASIC6.13□□□□□ -1.43
HOXC9P31274 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC9P31274 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
HOXC9P31274 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
HOXC9P31274 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXC9P31274 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
HOXC9P31274 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
HOXC9P31274 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 RNU1-130P-201ENST00000363930 160 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 SDHCP2-201ENST00000398565 501 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 RAD23BP1-201ENST00000421404 1227 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC9P31274 BTF3P6-201ENST00000448054 499 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 AC098799.3-201ENST00000506095 438 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 NPM1P6-201ENST00000521088 871 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 OR5D2P-201ENST00000524390 911 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC9P31274 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.12□□□□□ -1.43
HOXC9P31274 AL049874.4-201ENST00000557593 255 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXC9P31274 AC027216.1-201ENST00000577726 685 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 AC067959.1-201ENST00000604334 379 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 AL445567.2-201ENST00000618935 498 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 MFSD8-220ENST00000641243 1422 ntBASIC6.12□□□□□ -1.43
HOXC9P31274 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC9P31274 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
HOXC9P31274 ICE2P1-201ENST00000512800 1849 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC9P31274 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC9P31274 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXC9P31274 AC013268.2-201ENST00000420753 337 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 FAM204CP-201ENST00000424489 642 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 RPL5P2-201ENST00000429598 854 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 XKRYP6-201ENST00000440468 1116 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 XKRYP3-201ENST00000442113 1116 ntBASIC6.11□□□□□ -1.43
HOXC9P31274 ISCUP1-201ENST00000454451 448 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms