Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX1P28360 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
MSX1P28360 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX1P28360 NACAP2-201ENST00000318548 624 ntBASIC6.68□□□□□ -1.34
MSX1P28360 RPL7P26-201ENST00000333817 754 ntBASIC6.68□□□□□ -1.34
MSX1P28360 ARMCX7P-201ENST00000372828 562 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AL121972.1-201ENST00000402023 252 ntBASIC6.68□□□□□ -1.34
MSX1P28360 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX1P28360 GAPDHP42-201ENST00000406848 981 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC113618.1-201ENST00000416747 285 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AL593856.1-201ENST00000419949 805 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 AC009362.1-201ENST00000427253 406 ntBASIC6.68□□□□□ -1.34
MSX1P28360 SRIP2-201ENST00000428470 166 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 AL591212.2-201ENST00000433923 257 ntBASIC6.68□□□□□ -1.34
MSX1P28360 LYPLA1P1-201ENST00000434514 622 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AL627308.1-201ENST00000435693 821 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AL731892.1-201ENST00000437364 1192 ntBASIC6.68□□□□□ -1.34
MSX1P28360 Z98949.2-201ENST00000440996 144 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX1P28360 MTND6P5-201ENST00000448266 512 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AL133480.2-201ENST00000456723 487 ntBASIC6.68□□□□□ -1.34
MSX1P28360 RPL23P10-201ENST00000468780 412 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC021205.1-201ENST00000468797 348 ntBASIC6.68□□□□□ -1.34
MSX1P28360 RN7SL688P-201ENST00000471754 275 ntBASIC6.68□□□□□ -1.34
MSX1P28360 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.68□□□□□ -1.34
MSX1P28360 RNU4-49P-201ENST00000516080 140 ntBASIC6.68□□□□□ -1.34
MSX1P28360 RNU6-1314P-201ENST00000517139 104 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 IGLVI-42-201ENST00000522485 381 ntBASIC6.68□□□□□ -1.34
MSX1P28360 ZNF705CP-201ENST00000530515 889 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 FRG2DP-202ENST00000566967 323 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 AC005070.2-201ENST00000604391 260 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC080078.3-201ENST00000605407 463 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC021646.1-201ENST00000605469 484 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AL136139.1-201ENST00000605568 222 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.68□□□□□ -1.34
MSX1P28360 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSX1P28360 AC139426.3-201ENST00000605648 2059 ntBASIC6.68□□□□□ -1.34
MSX1P28360 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
MSX1P28360 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX1P28360 HUS1-201ENST00000258774 2935 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX1P28360 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC6.68□□□□□ -1.34
MSX1P28360 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX1P28360 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX1P28360 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSX1P28360 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX1P28360 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.67□□□□□ -1.34
MSX1P28360 IARS-205ENST00000443024 4341 ntTSL 5 BASIC6.67□□□□□ -1.34
MSX1P28360 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
MSX1P28360 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 INTS7-202ENST00000366993 3422 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 AC023886.2-201ENST00000321285 411 ntBASIC6.67□□□□□ -1.34
MSX1P28360 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
MSX1P28360 SNORA62.2-201ENST00000364672 152 ntBASIC6.67□□□□□ -1.34
MSX1P28360 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 SNORA22B-201ENST00000383876 138 ntBASIC6.67□□□□□ -1.34
MSX1P28360 Y_RNA.452-201ENST00000384202 108 ntBASIC6.67□□□□□ -1.34
MSX1P28360 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
MSX1P28360 MRPL42P2-201ENST00000403169 426 ntBASIC6.67□□□□□ -1.34
MSX1P28360 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 MICG-208ENST00000416822 132 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC6.67□□□□□ -1.34
MSX1P28360 AL359633.1-201ENST00000421403 310 ntBASIC6.67□□□□□ -1.34
MSX1P28360 EIF4A1P2-201ENST00000422633 1220 ntBASIC6.67□□□□□ -1.34
MSX1P28360 SNRPEP4-201ENST00000435815 279 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AC006335.2-201ENST00000437993 330 ntBASIC6.67□□□□□ -1.34
MSX1P28360 BNIP3P2-201ENST00000441221 577 ntBASIC6.67□□□□□ -1.34
MSX1P28360 MED28P7-201ENST00000456611 530 ntBASIC6.67□□□□□ -1.34
MSX1P28360 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.67□□□□□ -1.34
MSX1P28360 RN7SL705P-201ENST00000481678 294 ntBASIC6.67□□□□□ -1.34
MSX1P28360 RN7SL152P-201ENST00000484176 298 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AC005741.1-201ENST00000511094 432 ntBASIC6.67□□□□□ -1.34
MSX1P28360 PSMA2P1-201ENST00000526365 646 ntBASIC6.67□□□□□ -1.34
MSX1P28360 OR8A2P-201ENST00000528631 952 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AC027026.1-201ENST00000532323 742 ntBASIC6.67□□□□□ -1.34
MSX1P28360 OR5BN1P-201ENST00000532955 829 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms