Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RN7SKP92-201ENST00000517266 244 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXC4P09017 HNRNPRP2-201ENST00000528421 743 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 AC079075.1-201ENST00000559543 878 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 AC105129.1-201ENST00000560250 297 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXC4P09017 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXC4P09017 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC4P09017 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXC4P09017 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.66□□□□□ -1.66
HOXC4P09017 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXC4P09017 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
HOXC4P09017 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
HOXC4P09017 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.66
HOXC4P09017 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
HOXC4P09017 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.65□□□□□ -1.66
HOXC4P09017 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.65□□□□□ -1.66
HOXC4P09017 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HOXC4P09017 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC4P09017 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HOXC4P09017 RNU1-32P-201ENST00000363937 159 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC4P09017 RNU1-82P-201ENST00000390851 165 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HOXC4P09017 SDHCP2-201ENST00000398565 501 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AC234781.4-201ENST00000419384 244 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AL358176.3-201ENST00000420757 454 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 RPS27AP7-201ENST00000422792 455 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXC4P09017 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXC4P09017 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXC4P09017 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC4P09017 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXC4P09017 MRPL48P1-201ENST00000445390 636 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC4P09017 CEACAMP6-201ENST00000452007 574 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AC079168.2-201ENST00000453977 416 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 HMGB3P14-201ENST00000494195 599 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 CEACAMP10-202ENST00000495431 496 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXC4P09017 OR51K1P-201ENST00000510214 950 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AC092593.2-201ENST00000513866 913 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 RFPL4AP3-201ENST00000515267 345 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 FKBP1BP1-201ENST00000553366 325 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXC4P09017 MIR5096-201ENST00000583713 70 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AC073091.2-201ENST00000603205 907 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AC096586.2-201ENST00000610260 441 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXC4P09017 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.67
HOXC4P09017 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.65□□□□□ -1.67
HOXC4P09017 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC4P09017 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
HOXC4P09017 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC4P09017 AL731532.2-201ENST00000623542 1953 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC4P09017 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC4P09017 OR56B2P-202ENST00000641377 2453 ntBASIC4.65□□□□□ -1.67
HOXC4P09017 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HOXC4P09017 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC4P09017 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC4P09017 AL132640.2-201ENST00000559968 1698 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 ZNF137P-201ENST00000456718 1920 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC4P09017 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HOXC4P09017 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC4P09017 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
HOXC4P09017 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
HOXC4P09017 MTCO1P15-201ENST00000529569 1526 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 Z98745.1-201ENST00000402553 494 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AL359643.1-201ENST00000404109 423 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AP000580.1-201ENST00000404439 358 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXC4P09017 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC4P09017 AC068287.1-201ENST00000430283 295 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXC4P09017 AC108463.1-201ENST00000450258 347 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AP002371.1-201ENST00000463604 433 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AC090142.1-201ENST00000465776 462 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC4P09017 AK3P4-201ENST00000504283 583 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AC002456.2-201ENST00000509356 380 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AP000859.1-201ENST00000525536 307 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC4P09017 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC4P09017 AC008745.1-201ENST00000604064 271 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 AC004232.3-201ENST00000622977 525 ntBASIC4.64□□□□□ -1.67
HOXC4P09017 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC4P09017 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC4P09017 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
HOXC4P09017 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC4P09017 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC4P09017 AC000374.1-201ENST00000434698 1745 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC4P09017 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HOXC4P09017 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC4P09017 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC4P09017 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC4P09017 AL592148.3-201ENST00000608771 2646 ntBASIC4.63□□□□□ -1.67
HOXC4P09017 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms