Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC007618.1-201ENST00000366455 732 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 SNORA70.10-201ENST00000384515 134 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 HMGB3P7-201ENST00000400214 611 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 Z97832.1-201ENST00000402490 328 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AL355143.1-201ENST00000407101 841 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 NPM1P40-201ENST00000412758 733 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 PCNPP4-201ENST00000414817 517 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AL590762.4-201ENST00000425885 253 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 VN1R54P-201ENST00000435210 1049 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 TCEA1P3-201ENST00000443005 880 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AL137845.2-201ENST00000444292 988 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 SUMO2P1-206ENST00000445436 284 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 PRPF38AP1-201ENST00000451976 933 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 RN7SL319P-201ENST00000480656 221 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC092902.1-201ENST00000486999 259 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC140172.1-201ENST00000502928 141 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 NIFKP7-201ENST00000503365 834 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AL390726.5-202ENST00000564800 256 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 EIF1P5-201ENST00000585002 234 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AC023510.2-201ENST00000622162 746 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 INTS6P1-201ENST00000504674 2530 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 DDX6P1-205ENST00000441966 1436 ntBASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SNX9Q9Y5X1 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 RN7SKP95-201ENST00000362860 303 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 RNU6-697P-201ENST00000363348 107 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 SNORA51.8-201ENST00000384234 132 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 RNU6-40P-201ENST00000384254 107 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 U3.32-201ENST00000408116 212 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 CHEK2P3-201ENST00000416118 248 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 RPS27P18-201ENST00000431701 247 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 TPT1P1-201ENST00000458495 518 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 RN7SL591P-201ENST00000496150 292 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 RPS27AP18-201ENST00000515536 459 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 IGLVIV-66-1-201ENST00000521832 460 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC100784.1-201ENST00000522790 310 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC012339.2-201ENST00000523996 453 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 NDUFB4P11-201ENST00000560510 395 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC018552.1-201ENST00000562099 811 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 MIR4436B2-201ENST00000581415 91 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC233702.9-201ENST00000581528 203 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC011840.5-201ENST00000582125 771 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 MIR4436B1-201ENST00000583272 91 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC024940.4-201ENST00000605507 246 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AL391834.2-201ENST00000609982 546 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 MIR6730-201ENST00000622213 67 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC010872.1-201ENST00000624225 675 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC021242.1-201ENST00000507315 2035 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 AC011755.1-201ENST00000623763 2049 ntBASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SNX9Q9Y5X1 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 AC025574.1-201ENST00000554784 1653 ntBASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SNX9Q9Y5X1 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms