Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC008033.1-201ENST00000216407 1162 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 MIR183-201ENST00000384958 110 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AC091286.1-201ENST00000431233 461 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 NANOGP10-201ENST00000453325 895 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 CAB39P1-201ENST00000502277 460 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 KCTD9P2-201ENST00000512203 1013 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 GTF2IP22-201ENST00000554443 182 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AL021997.2-201ENST00000615674 271 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 SCAF11-205ENST00000465950 5296 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 STK3-216ENST00000523601 3107 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 SNORA5A-201ENST00000384111 134 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 snoU13.29-201ENST00000459370 104 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 RPL7P49-201ENST00000471402 708 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 UBE2DNL-203ENST00000474922 222 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 MIR7975-201ENST00000619350 68 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 RNA5SP513-201ENST00000364648 118 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 TCEA1P4-201ENST00000415066 844 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 NPM1P36-201ENST00000415681 835 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 RPL7P2-201ENST00000427639 268 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AL451139.1-201ENST00000434718 346 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 PPIAP3-201ENST00000450588 505 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 DUXAP2-201ENST00000519198 589 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AC007991.1-201ENST00000522680 631 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AL138721.1-201ENST00000616756 179 ntBASIC4.37□□□□□ -1.71
VPS13AQ96RL7 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS13AQ96RL7 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 METTL2B-204ENST00000480046 5743 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AC010329.1-201ENST00000593903 8328 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 IFITM8P-201ENST00000522529 394 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 TVP23BP1-201ENST00000557500 617 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AC010487.1-201ENST00000594408 1172 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 CR392039.5-201ENST00000623201 510 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AL592156.1-201ENST00000508758 304 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 SNORA70.24-201ENST00000517233 118 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 MIR6133-201ENST00000617057 108 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AL445363.3-201ENST00000623080 671 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 SMG1P6-201ENST00000532337 2930 ntBASIC4.36□□□□□ -1.71
VPS13AQ96RL7 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS13AQ96RL7 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC007382.1-201ENST00000624376 2618 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 JPX-212ENST00000639185 9658 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AL122016.1-201ENST00000403365 367 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 RNA5SP36-201ENST00000410197 133 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 VN1R37P-201ENST00000419096 748 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms