Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 CDY14P-201ENST00000431260 1014 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 CDY12P-201ENST00000440679 1015 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 CDY13P-201ENST00000445813 1015 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 CDY23P-201ENST00000451661 1014 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.4□□□□□ -1.71
FOXA1P55317 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXA1P55317 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 RN7SL41P-201ENST00000476144 297 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 RPL21P6-201ENST00000479171 504 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 AC108022.1-201ENST00000493466 478 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 RN7SL591P-201ENST00000496150 292 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.4□□□□□ -1.71
FOXA1P55317 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 IGLV2-28-201ENST00000520681 304 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.4□□□□□ -1.71
FOXA1P55317 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.4□□□□□ -1.71
FOXA1P55317 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXA1P55317 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 MIR3667-201ENST00000581025 74 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 SDR42E1P1-201ENST00000611327 477 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 AC023509.5-201ENST00000617434 807 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 MIR6719-201ENST00000622428 87 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 U3.53-201ENST00000628922 216 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA1P55317 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA1P55317 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA1P55317 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
FOXA1P55317 AL449283.1-201ENST00000602631 3403 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 NXPH1-205ENST00000602349 1953 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA1P55317 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
FOXA1P55317 AC132825.1-201ENST00000463573 2247 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 AC083843.2-201ENST00000568248 6253 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
FOXA1P55317 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 AL590240.1-201ENST00000334118 313 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXA1P55317 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 RNA5SP296-201ENST00000410523 111 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 RNA5SP146-201ENST00000410743 123 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 RPL21P108-201ENST00000413857 481 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXA1P55317 TRGV5P-201ENST00000419915 354 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 RAD23BP1-201ENST00000421404 1227 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 AC016831.4-201ENST00000438302 307 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXA1P55317 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.39□□□□□ -1.71
FOXA1P55317 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXA1P55317 RPL23AP65-201ENST00000475608 468 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA1P55317 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA1P55317 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.39□□□□□ -1.71
FOXA1P55317 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA1P55317 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
FOXA1P55317 AC100770.1-201ENST00000532310 322 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA1P55317 AL512782.1-201ENST00000603093 364 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 AC098935.2-201ENST00000604222 466 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 AC133644.2-201ENST00000608142 540 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.39□□□□□ -1.71
FOXA1P55317 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
FOXA1P55317 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
FOXA1P55317 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXA1P55317 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA1P55317 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
FOXA1P55317 AC139769.1-204ENST00000472297 1931 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA1P55317 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA1P55317 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
FOXA1P55317 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA1P55317 ICE2P1-201ENST00000512800 1849 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA1P55317 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA1P55317 FCF1P5-201ENST00000406490 482 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA1P55317 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA1P55317 BX510359.2-201ENST00000417920 305 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA1P55317 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.38□□□□□ -1.71
FOXA1P55317 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 AC004453.1-201ENST00000487895 408 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 MTND4LP2-201ENST00000502312 285 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms