Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TMBIM7P-201ENST00000418074 855 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AC140479.3-201ENST00000418944 1126 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AL034379.1-201ENST00000423216 253 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AC244033.1-201ENST00000426826 870 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AC097523.2-201ENST00000435551 652 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC4P09017 AC006463.2-201ENST00000473326 348 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC4P09017 RPL23AP72-201ENST00000492447 435 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC4P09017 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC4P09017 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC4P09017 RNU2-30P-201ENST00000516209 141 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC4P09017 AC005868.1-201ENST00000536421 331 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
HOXC4P09017 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.68□□□□□ -1.66
HOXC4P09017 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC4P09017 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC4P09017 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC4P09017 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.68□□□□□ -1.66
HOXC4P09017 OR8G7P-201ENST00000616658 848 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AC011815.3-201ENST00000624194 473 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 MIR7641-1-201ENST00000627518 61 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC4P09017 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXC4P09017 AC073869.10-201ENST00000642016 354 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 AC010928.1-201ENST00000592477 1447 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC4P09017 AL034370.1-201ENST00000397254 1590 ntBASIC4.68□□□□□ -1.66
HOXC4P09017 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
HOXC4P09017 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC4P09017 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC4P09017 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
HOXC4P09017 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
HOXC4P09017 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC4P09017 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.68□□□□□ -1.66
HOXC4P09017 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC4P09017 MAPK10-304ENST00000641341 3984 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC4P09017 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
HOXC4P09017 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC4P09017 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
HOXC4P09017 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC4P09017 RN7SKP106-201ENST00000410832 272 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 OR51B3P-201ENST00000412287 913 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 MTND4LP21-201ENST00000415303 295 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 AL807761.1-201ENST00000417622 171 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXC4P09017 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC4P09017 BTF3P6-201ENST00000448054 499 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 RPL7L1P1-201ENST00000448259 785 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 AL162591.2-201ENST00000449634 317 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 TPT1P13-201ENST00000449760 499 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC4P09017 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 RNA5SP103-201ENST00000459503 118 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 RPL12P20-201ENST00000475538 479 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 AC025164.1-201ENST00000496249 478 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC4P09017 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXC4P09017 OR5M2P-201ENST00000529003 936 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXC4P09017 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXC4P09017 AC093249.4-201ENST00000564755 259 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 AL713998.2-201ENST00000604538 1198 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC4P09017 ADAM5-202ENST00000399789 1942 ntBASIC4.67□□□□□ -1.66
HOXC4P09017 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
HOXC4P09017 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXC4P09017 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC4P09017 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXC4P09017 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC4P09017 Z95327.2-201ENST00000414579 1873 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXC4P09017 AL513548.1-201ENST00000562904 1724 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HOXC4P09017 AL731566.1-201ENST00000620490 1937 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC4P09017 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXC4P09017 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HOXC4P09017 U3.35-201ENST00000408405 208 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 RN7SKP247-201ENST00000411094 308 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXC4P09017 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC4P09017 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXC4P09017 RPS6P2-201ENST00000454208 705 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXC4P09017 NDUFA12P1-201ENST00000455914 406 ntBASIC4.66□□□□□ -1.66
HOXC4P09017 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXC4P09017 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms