Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.4□□□□□ -1.55
VPS4AQ9UN37 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.4□□□□□ -1.55
VPS4AQ9UN37 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS4AQ9UN37 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS4AQ9UN37 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 CASC19-281ENST00000642118 1554 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC002525.1-201ENST00000624392 1622 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC092681.1-201ENST00000297369 291 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AL121886.1-201ENST00000358609 435 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 RNU6-236P-201ENST00000363886 106 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 RNU6-171P-201ENST00000384354 107 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 MIR137-201ENST00000385223 102 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 RNU6-932P-201ENST00000391108 106 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 RNF10P1-201ENST00000418589 369 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 MTND2P16-201ENST00000419987 799 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC093422.3-201ENST00000428506 305 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AL035458.1-201ENST00000433096 585 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 USP9YP24-201ENST00000434374 697 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 FMO7P-201ENST00000436045 768 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 MTND2P40-201ENST00000436718 841 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 USP9YP17-201ENST00000444617 696 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 Z77249.1-201ENST00000444622 1175 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 Z73417.1-201ENST00000447373 778 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 HSPE1P22-201ENST00000456856 327 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC022215.1-201ENST00000481770 362 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC004815.1-201ENST00000484185 331 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC023424.1-201ENST00000496058 459 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 BOLA3P3-201ENST00000505182 232 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AP001636.2-201ENST00000525517 696 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 OR10V3P-201ENST00000525712 725 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 HMGN2P36-201ENST00000529541 409 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 VBP1-203ENST00000535916 944 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 DUX4L52-201ENST00000549363 777 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 ZNF971P-201ENST00000562068 1249 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC012254.4-201ENST00000588843 273 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AP002884.5-201ENST00000595053 1132 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 ELOCP35-201ENST00000604289 336 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC079610.2-201ENST00000604818 690 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC012557.1-201ENST00000607115 611 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AC097065.2-201ENST00000608159 533 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AL451049.1-201ENST00000608672 497 ntBASIC5.39□□□□□ -1.55
VPS4AQ9UN37 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
VPS4AQ9UN37 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 OR4F13P-202ENST00000560066 2054 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 SNORA64.1-201ENST00000362600 132 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 RNA5SP507-201ENST00000363603 121 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 MIR223-201ENST00000385204 110 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 GAPDHP15-201ENST00000398586 975 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 AC096921.1-201ENST00000411661 375 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 AL357752.1-201ENST00000412817 349 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 TRIM60P5Y-201ENST00000413946 574 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS4AQ9UN37 AL590806.1-201ENST00000415818 853 ntBASIC5.38□□□□□ -1.55
VPS4AQ9UN37 AC127526.2-201ENST00000426436 775 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms