Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 MTCO3P15-201ENST00000526563 574 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 HAUS8P1-201ENST00000549005 542 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC090695.1-201ENST00000561269 1222 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC010503.3-201ENST00000594355 540 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 VN1R83P-201ENST00000595685 445 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC124856.1-201ENST00000600819 896 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC018809.2-201ENST00000602436 3823 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AL513327.3-201ENST00000602618 469 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AL133481.2-203ENST00000607558 139 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC000068.2-201ENST00000608816 460 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 TUSC7.1-201ENST00000610969 165 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AL139407.1-201ENST00000613826 1175 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC004943.3-201ENST00000624116 600 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AC068137.4-201ENST00000638485 296 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TDP1Q9NUW8 CCT8P1-201ENST00000413611 1657 ntBASIC5.79□□□□□ -1.48
TDP1Q9NUW8 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 Y_RNA.169-201ENST00000363745 96 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 SNORA58B-201ENST00000364259 136 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 RNA5SP91-201ENST00000390902 119 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 RPL23AP17-201ENST00000401064 499 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 Z75741.2-201ENST00000417272 1167 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AL139148.1-201ENST00000427122 680 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 MOB1AP1-201ENST00000430903 535 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 RN7SL610P-201ENST00000463845 291 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 RPS7P6-201ENST00000485777 579 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 RPL32P9-201ENST00000487963 407 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 RN7SKP248-201ENST00000516278 305 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 SS18L2P2-201ENST00000583960 235 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC005252.1-201ENST00000604518 1063 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AL135786.2-201ENST00000608422 615 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AC037198.3-201ENST00000616754 526 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 AL512506.2-201ENST00000624472 458 ntBASIC5.78□□□□□ -1.48
TDP1Q9NUW8 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TDP1Q9NUW8 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.77□□□□□ -1.48
TDP1Q9NUW8 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 AC104454.1-201ENST00000421341 1401 ntBASIC5.77□□□□□ -1.49
TDP1Q9NUW8 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 GTF2H2B-203ENST00000508065 1432 ntBASIC5.77□□□□□ -1.49
TDP1Q9NUW8 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 AL009179.1-201ENST00000406085 265 ntBASIC5.77□□□□□ -1.49
TDP1Q9NUW8 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.77□□□□□ -1.49
TDP1Q9NUW8 RNA5SP498-201ENST00000411342 120 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms