Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MRPS33P2-201ENST00000507850 322 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 NDUFB5P1-201ENST00000508134 564 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 SEC11B-201ENST00000518383 499 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC105031.1-201ENST00000518550 476 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC008033.2-201ENST00000542626 177 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC008147.3-201ENST00000548666 354 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 EDDM3DP-201ENST00000554692 434 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC122134.1-201ENST00000565664 1104 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 MIR4675-201ENST00000577898 77 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC104687.2-201ENST00000604442 342 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC002044.3-201ENST00000623314 541 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 CR381572.2-201ENST00000624852 397 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC131971.1-201ENST00000332881 1482 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS35Q96QK1 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.9□□□□□ -1.62
VPS35Q96QK1 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS35Q96QK1 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
VPS35Q96QK1 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS35Q96QK1 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
VPS35Q96QK1 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC013442.1-201ENST00000397347 228 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 HMGB3P7-201ENST00000400214 611 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 MIR1271-201ENST00000408537 86 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 RN7SKP125-201ENST00000410481 302 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC007064.3-201ENST00000422608 359 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 Z85994.2-201ENST00000434327 452 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 RPL35AP21-201ENST00000437667 333 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 PRPF38AP2-201ENST00000438179 851 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 HIGD1AP8-201ENST00000453927 274 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 RN7SL517P-201ENST00000462240 305 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 NIP7P2-201ENST00000485801 544 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 NDUFA5P12-201ENST00000503796 343 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS35Q96QK1 RPL23AP53-201ENST00000521854 457 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC018442.3-201ENST00000523025 183 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 EIF4A2P5-201ENST00000529914 499 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC233280.2-201ENST00000603917 1070 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC090510.2-201ENST00000617465 629 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AF117829.2-201ENST00000619538 361 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC019206.1-201ENST00000621938 425 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS35Q96QK1 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
VPS35Q96QK1 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS35Q96QK1 AC087565.3-202ENST00000642085 1603 ntBASIC4.9□□□□□ -1.63
VPS35Q96QK1 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC068446.1-201ENST00000556425 1549 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC010132.2-201ENST00000295493 1043 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC104297.1-201ENST00000393779 870 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 GTF2IP5-201ENST00000414608 731 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 QRSL1P2-201ENST00000418582 964 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC013429.2-201ENST00000418798 781 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC013470.3-201ENST00000420252 1194 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC006455.6-201ENST00000426192 893 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC093414.1-201ENST00000434712 514 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 SCAND3P1-201ENST00000439854 1060 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms