Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC007996.1-201ENST00000620414 2821 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 RN7SKP95-201ENST00000362860 303 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 RNA5SP428-201ENST00000365129 132 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 RNA5SP187-201ENST00000384400 119 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 SNORA66-201ENST00000384792 133 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 GSTA12P-201ENST00000402398 508 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC019050.1-201ENST00000418508 492 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC016712.1-201ENST00000431088 378 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC046176.1-201ENST00000435260 1170 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 RN7SL443P-201ENST00000464331 290 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC107918.3-201ENST00000533272 382 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC074050.1-201ENST00000563247 211 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC027216.1-201ENST00000577726 685 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 SS18L2P2-201ENST00000583960 235 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC010503.3-201ENST00000594355 540 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC006363.1-201ENST00000603806 463 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 BNIP3P35-201ENST00000604530 490 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC019080.5-201ENST00000624891 757 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.14□□□□□ -1.59
HDDC3Q8N4P3 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 RN7SKP113-201ENST00000363891 295 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 RNA5SP223-201ENST00000365174 120 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 RNU6-178P-201ENST00000384631 104 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 GPS2P1-201ENST00000411761 986 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 BTF3P9-201ENST00000418784 283 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC009480.2-201ENST00000422916 432 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 RNF19BPX-201ENST00000426224 625 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AL136231.1-201ENST00000429407 730 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC068287.1-201ENST00000430283 295 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 RPL5P25-201ENST00000441148 775 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AK5-208ENST00000478255 556 ntTSL 2 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 PCNAP1-201ENST00000505363 709 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 RNU6-551P-201ENST00000516661 103 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 MTCYBP19-201ENST00000517463 1124 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 C1GALT1P3-201ENST00000522049 819 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 OR10D4P-201ENST00000525892 951 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 BGLT3-201ENST00000564523 994 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 MIR4737-201ENST00000583979 81 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC105254.2-201ENST00000603636 436 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 BNIP3P7-201ENST00000605641 516 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AC010632.3-201ENST00000611377 369 ntBASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HDDC3Q8N4P3 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms