Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNA5SP52-201ENST00000362448 134 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 RN7SKP124-201ENST00000364730 341 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 NCSTNP1-201ENST00000406229 144 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 VN1R8P-201ENST00000407739 893 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 TBCAP2-201ENST00000416175 326 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 DDX39BP1-205ENST00000422507 192 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA3P55318 RPL21P43-201ENST00000425440 472 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC3.51□□□□□ -1.85
FOXA3P55318 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA3P55318 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXA3P55318 RPS17P8-201ENST00000434525 335 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA3P55318 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXA3P55318 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA3P55318 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA3P55318 AC097484.1-201ENST00000471148 389 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 PSMA2P2-201ENST00000504319 686 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 SNORD46.2-201ENST00000516021 102 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 RN7SKP260-201ENST00000516907 149 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA3P55318 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXA3P55318 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA3P55318 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.51□□□□□ -1.85
FOXA3P55318 AL049839.1-201ENST00000556151 657 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA3P55318 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA3P55318 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 MIR744-201ENST00000578242 98 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.51□□□□□ -1.85
FOXA3P55318 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.51□□□□□ -1.85
FOXA3P55318 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA3P55318 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA3P55318 AL158062.1-201ENST00000619632 745 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 AC073593.1-201ENST00000624500 411 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA3P55318 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.51□□□□□ -1.85
FOXA3P55318 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXA3P55318 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
FOXA3P55318 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 AL355852.1-201ENST00000454081 1771 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 RNF19BPY-201ENST00000458209 1550 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 HSPA8P17-201ENST00000427029 1382 ntBASIC3.51□□□□□ -1.85
FOXA3P55318 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.51□□□□□ -1.85
FOXA3P55318 AC015813.6-201ENST00000624409 5808 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
FOXA3P55318 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA3P55318 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA3P55318 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA3P55318 AL929601.4-201ENST00000613011 1341 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AL031119.1-201ENST00000404707 1879 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
FOXA3P55318 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
FOXA3P55318 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
FOXA3P55318 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 AL590762.2-201ENST00000395798 571 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC004552.1-201ENST00000419089 348 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 LINC00993-201ENST00000420453 540 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 RPS3P2-201ENST00000421346 701 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA3P55318 MAPRE1P3-201ENST00000435438 796 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA3P55318 MTND4LP12-201ENST00000448237 295 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 OR52E7P-201ENST00000452394 933 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA3P55318 RPS26P39-201ENST00000469206 341 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 RPS26P3-201ENST00000470205 348 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC090543.2-201ENST00000483963 348 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC090013.1-201ENST00000485147 480 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC004057.1-201ENST00000485827 348 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 RN7SL244P-201ENST00000493405 297 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AGGF1P3-201ENST00000493675 1213 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC083829.1-201ENST00000503756 657 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.5□□□□□ -1.85
FOXA3P55318 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC3.5□□□□□ -1.85
FOXA3P55318 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA3P55318 AC135626.1-201ENST00000556983 435 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA3P55318 AC124068.1-201ENST00000563131 678 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC3.5□□□□□ -1.85
FOXA3P55318 AC008638.3-201ENST00000603341 463 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC100767.2-201ENST00000604840 693 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 MIR7109-201ENST00000613748 65 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AL356752.1-201ENST00000615844 593 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms