Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.62□□□□□ -1.51
BRCA1P38398 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 AL137918.1-201ENST00000624542 1922 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 OR51H2P-202ENST00000641424 3046 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AL117339.4-201ENST00000608335 7063 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
BRCA1P38398 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
BRCA1P38398 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
BRCA1P38398 OR5P1P-201ENST00000299512 925 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 SNORA9-201ENST00000384215 133 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AC097374.1-203ENST00000400783 485 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 SNORA11.1-201ENST00000408133 129 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.62□□□□□ -1.51
BRCA1P38398 YY1P1-201ENST00000427625 668 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.62□□□□□ -1.51
BRCA1P38398 PRPF38AP1-201ENST00000451976 933 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.62□□□□□ -1.51
BRCA1P38398 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.62□□□□□ -1.51
BRCA1P38398 AP000827.1-201ENST00000527814 258 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AL162574.1-201ENST00000615702 950 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AC006453.5-201ENST00000636451 619 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AL139254.3-201ENST00000641097 674 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 DNM1P47-203ENST00000571780 12667 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
BRCA1P38398 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 TCP11X1-202ENST00000622971 1372 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.61□□□□□ -1.51
BRCA1P38398 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 AP005432.1-201ENST00000580891 3485 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.61□□□□□ -1.51
BRCA1P38398 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.61□□□□□ -1.51
BRCA1P38398 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 SDHCP2-201ENST00000398565 501 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.61□□□□□ -1.51
BRCA1P38398 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.61□□□□□ -1.51
BRCA1P38398 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.61□□□□□ -1.51
BRCA1P38398 RN7SL600P-201ENST00000581811 299 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.61□□□□□ -1.51
BRCA1P38398 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.61□□□□□ -1.51
BRCA1P38398 MIR6075-201ENST00000620782 95 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 AL356121.2-201ENST00000624715 780 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 AC010168.2-201ENST00000562691 5428 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 AC011447.7-201ENST00000624228 1590 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 AL031119.1-201ENST00000404707 1879 ntBASIC5.61□□□□□ -1.51
BRCA1P38398 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.61□□□□□ -1.51
BRCA1P38398 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
BRCA1P38398 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.61□□□□□ -1.51
BRCA1P38398 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
BRCA1P38398 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
BRCA1P38398 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.6□□□□□ -1.51
BRCA1P38398 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 RNA5SP241-201ENST00000391326 114 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC5.6□□□□□ -1.51
BRCA1P38398 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.6□□□□□ -1.51
BRCA1P38398 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 MTND2P40-201ENST00000436718 841 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 AC245028.2-201ENST00000458673 253 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 RPS7P7-201ENST00000463499 571 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.6□□□□□ -1.51
BRCA1P38398 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.6□□□□□ -1.51
BRCA1P38398 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
BRCA1P38398 AC024220.1-201ENST00000603675 484 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 AC113403.1-201ENST00000604910 193 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 AC099654.11-201ENST00000638857 294 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.6□□□□□ -1.51
BRCA1P38398 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
BRCA1P38398 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.6□□□□□ -1.51
BRCA1P38398 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC5.6□□□□□ -1.51
BRCA1P38398 RNA5SP124-201ENST00000362739 110 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
BRCA1P38398 RNU6-628P-201ENST00000410675 107 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.6□□□□□ -1.51
BRCA1P38398 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.6□□□□□ -1.51
BRCA1P38398 RPL23AP38-201ENST00000423801 469 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 H2AFZP5-201ENST00000446960 382 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 AC090142.1-201ENST00000465776 462 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 AL133372.1-201ENST00000493565 745 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.6□□□□□ -1.51
BRCA1P38398 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.6□□□□□ -1.51
BRCA1P38398 MIR4298-201ENST00000584380 73 ntBASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms