Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.13□□□□□ -1.43
SMARCA1P28370 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.13□□□□□ -1.43
SMARCA1P28370 SUMO2P14-201ENST00000604488 293 ntBASIC6.13□□□□□ -1.43
SMARCA1P28370 AC009597.2-201ENST00000604659 592 ntBASIC6.13□□□□□ -1.43
SMARCA1P28370 AC093424.1-201ENST00000604999 338 ntBASIC6.13□□□□□ -1.43
SMARCA1P28370 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.13□□□□□ -1.43
SMARCA1P28370 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC6.13□□□□□ -1.43
SMARCA1P28370 CYP4F35P-202ENST00000636121 390 ntBASIC6.13□□□□□ -1.43
SMARCA1P28370 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
SMARCA1P28370 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SMARCA1P28370 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SMARCA1P28370 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SMARCA1P28370 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.13□□□□□ -1.43
SMARCA1P28370 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC6.13□□□□□ -1.43
SMARCA1P28370 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
SMARCA1P28370 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SMARCA1P28370 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
SMARCA1P28370 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
SMARCA1P28370 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 U3.3-201ENST00000362986 216 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 SNORD56.4-201ENST00000363883 71 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 TANK-203ENST00000402568 878 ntTSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.12□□□□□ -1.43
SMARCA1P28370 PNRC2P1-201ENST00000423940 420 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 RPS4XP16-201ENST00000427198 791 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 NANOGP4-201ENST00000427230 913 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 RPS27AP6-201ENST00000427962 448 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 NDUFA5P10-201ENST00000432147 357 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AL161722.2-201ENST00000434731 981 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.12□□□□□ -1.43
SMARCA1P28370 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.12□□□□□ -1.43
SMARCA1P28370 ZNF733P-202ENST00000444809 1573 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AL031313.1-201ENST00000448435 256 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 GAPDHP14-201ENST00000450472 937 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AL389915.2-201ENST00000454576 441 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 Z92846.1-201ENST00000456203 268 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 TPT1P1-201ENST00000458495 518 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.12□□□□□ -1.43
SMARCA1P28370 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.12□□□□□ -1.43
SMARCA1P28370 TPT1P3-201ENST00000492841 512 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 RPL15P21-201ENST00000495592 567 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AC072052.1-201ENST00000496556 306 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 SNRPCP2-201ENST00000504370 475 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AC021193.1-201ENST00000511607 420 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AC006427.1-201ENST00000514359 712 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC6.12□□□□□ -1.43
SMARCA1P28370 MTND2P38-201ENST00000522536 667 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AC004825.1-201ENST00000555068 586 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.12□□□□□ -1.43
SMARCA1P28370 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC6.12□□□□□ -1.43
SMARCA1P28370 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC6.12□□□□□ -1.43
SMARCA1P28370 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AL450336.1-201ENST00000605180 586 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AC093673.2-201ENST00000609674 331 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 BX323046.1-201ENST00000610145 535 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 AC092747.4-201ENST00000620519 1861 ntBASIC6.12□□□□□ -1.43
SMARCA1P28370 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SMARCA1P28370 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SMARCA1P28370 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC6.12□□□□□ -1.43
SMARCA1P28370 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.11□□□□□ -1.43
SMARCA1P28370 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 AL121950.1-201ENST00000624993 2077 ntBASIC6.11□□□□□ -1.43
SMARCA1P28370 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 OR9K1P-202ENST00000641111 3217 ntBASIC6.11□□□□□ -1.43
SMARCA1P28370 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
SMARCA1P28370 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 RNU6-249P-201ENST00000363016 102 ntBASIC6.11□□□□□ -1.43
SMARCA1P28370 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SMARCA1P28370 RNU6-171P-201ENST00000384354 107 ntBASIC6.11□□□□□ -1.43
SMARCA1P28370 AP002530.1-201ENST00000405705 684 ntBASIC6.11□□□□□ -1.43
SMARCA1P28370 AC002524.1-201ENST00000411687 547 ntBASIC6.11□□□□□ -1.43
SMARCA1P28370 GPS2P1-201ENST00000411761 986 ntBASIC6.11□□□□□ -1.43
SMARCA1P28370 OR51B3P-201ENST00000412287 913 ntBASIC6.11□□□□□ -1.43
SMARCA1P28370 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC6.11□□□□□ -1.43
SMARCA1P28370 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC6.11□□□□□ -1.43
SMARCA1P28370 AC005033.1-201ENST00000428904 813 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 135.9 ms