Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
BDNFP23560 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
BDNFP23560 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
BDNFP23560 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 AC009962.1-201ENST00000567327 3813 ntBASIC5.64□□□□□ -1.51
BDNFP23560 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.64□□□□□ -1.51
BDNFP23560 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.64□□□□□ -1.51
BDNFP23560 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
BDNFP23560 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
BDNFP23560 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 RPL23P2-201ENST00000320371 421 ntBASIC5.64□□□□□ -1.51
BDNFP23560 RNA5SP453-201ENST00000362503 119 ntBASIC5.64□□□□□ -1.51
BDNFP23560 RN7SKP185-201ENST00000362813 326 ntBASIC5.64□□□□□ -1.51
BDNFP23560 MIR105-2-201ENST00000385083 81 ntBASIC5.64□□□□□ -1.51
BDNFP23560 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
BDNFP23560 DUTP5-201ENST00000406790 469 ntBASIC5.64□□□□□ -1.51
BDNFP23560 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.64□□□□□ -1.51
BDNFP23560 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 BX119904.1-201ENST00000432026 348 ntBASIC5.64□□□□□ -1.51
BDNFP23560 LYPLA1P1-201ENST00000434514 622 ntBASIC5.64□□□□□ -1.51
BDNFP23560 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.64□□□□□ -1.51
BDNFP23560 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.64□□□□□ -1.51
BDNFP23560 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.64□□□□□ -1.51
BDNFP23560 RPS27P5-201ENST00000444247 244 ntBASIC5.64□□□□□ -1.51
BDNFP23560 AL935212.3-201ENST00000450729 284 ntBASIC5.64□□□□□ -1.51
BDNFP23560 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
BDNFP23560 RN7SL423P-201ENST00000486202 304 ntBASIC5.64□□□□□ -1.51
BDNFP23560 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC5.64□□□□□ -1.51
BDNFP23560 AC097486.1-201ENST00000515331 210 ntBASIC5.64□□□□□ -1.51
BDNFP23560 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 AC090819.1-201ENST00000523800 1111 ntBASIC5.64□□□□□ -1.51
BDNFP23560 CIR1P1-201ENST00000524055 1133 ntBASIC5.64□□□□□ -1.51
BDNFP23560 OR8Q1P-201ENST00000526467 655 ntBASIC5.64□□□□□ -1.51
BDNFP23560 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.64□□□□□ -1.51
BDNFP23560 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC5.64□□□□□ -1.51
BDNFP23560 AC009852.2-201ENST00000567898 485 ntBASIC5.64□□□□□ -1.51
BDNFP23560 PCNAP1-202ENST00000595299 752 ntBASIC5.64□□□□□ -1.51
BDNFP23560 AC211433.2-201ENST00000608433 387 ntBASIC5.64□□□□□ -1.51
BDNFP23560 AC006946.3-201ENST00000609791 756 ntBASIC5.64□□□□□ -1.51
BDNFP23560 uc_338.7-201ENST00000621834 124 ntBASIC5.64□□□□□ -1.51
BDNFP23560 AC018445.2-201ENST00000622987 260 ntBASIC5.64□□□□□ -1.51
BDNFP23560 AC005618.4-201ENST00000625053 554 ntBASIC5.64□□□□□ -1.51
BDNFP23560 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.64□□□□□ -1.51
BDNFP23560 SAMMSON-227ENST00000642114 1199 ntBASIC5.64□□□□□ -1.51
BDNFP23560 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.64□□□□□ -1.51
BDNFP23560 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.64□□□□□ -1.51
BDNFP23560 AC100757.1-201ENST00000616872 1835 ntBASIC5.64□□□□□ -1.51
BDNFP23560 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BDNFP23560 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.64□□□□□ -1.51
BDNFP23560 AC004656.1-201ENST00000568479 4951 ntBASIC5.64□□□□□ -1.51
BDNFP23560 AL138820.1-201ENST00000617901 5305 ntBASIC5.63□□□□□ -1.51
BDNFP23560 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.63□□□□□ -1.51
BDNFP23560 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.63□□□□□ -1.51
BDNFP23560 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.63□□□□□ -1.51
BDNFP23560 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
BDNFP23560 AC074029.4-201ENST00000624796 1859 ntBASIC5.63□□□□□ -1.51
BDNFP23560 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BDNFP23560 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
BDNFP23560 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
BDNFP23560 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
BDNFP23560 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.63□□□□□ -1.51
BDNFP23560 AL353692.2-201ENST00000407054 335 ntBASIC5.63□□□□□ -1.51
BDNFP23560 VTA1P1-201ENST00000414044 866 ntBASIC5.63□□□□□ -1.51
BDNFP23560 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.63□□□□□ -1.51
BDNFP23560 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.63□□□□□ -1.51
BDNFP23560 AC005033.1-201ENST00000428904 813 ntBASIC5.63□□□□□ -1.51
BDNFP23560 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.63□□□□□ -1.51
BDNFP23560 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BDNFP23560 TPTE2P6-202ENST00000445572 1007 ntBASIC5.63□□□□□ -1.51
BDNFP23560 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.63□□□□□ -1.51
BDNFP23560 RPL7P31-201ENST00000450192 724 ntBASIC5.63□□□□□ -1.51
BDNFP23560 RPL7P40-201ENST00000481703 745 ntBASIC5.63□□□□□ -1.51
BDNFP23560 RPL15P21-201ENST00000495592 567 ntBASIC5.63□□□□□ -1.51
BDNFP23560 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.63□□□□□ -1.51
BDNFP23560 RPS4XP20-201ENST00000505751 772 ntBASIC5.63□□□□□ -1.51
BDNFP23560 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.63□□□□□ -1.51
BDNFP23560 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.63□□□□□ -1.51
BDNFP23560 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.63□□□□□ -1.51
BDNFP23560 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BDNFP23560 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC5.63□□□□□ -1.51
BDNFP23560 AL121594.4-201ENST00000556211 1196 ntBASIC5.63□□□□□ -1.51
BDNFP23560 HMGB3P26-201ENST00000560051 582 ntBASIC5.63□□□□□ -1.51
BDNFP23560 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.63□□□□□ -1.51
BDNFP23560 AC093765.1-201ENST00000603758 881 ntBASIC5.63□□□□□ -1.51
BDNFP23560 AC009027.1-201ENST00000604510 479 ntBASIC5.63□□□□□ -1.51
BDNFP23560 AC005252.1-201ENST00000604518 1063 ntBASIC5.63□□□□□ -1.51
BDNFP23560 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.63□□□□□ -1.51
BDNFP23560 AC244107.2-201ENST00000611773 76 ntBASIC5.63□□□□□ -1.51
BDNFP23560 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 157.9 ms