Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
HOXD4P09016 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 RN7SL189P-201ENST00000468631 289 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC025181.1-201ENST00000477507 416 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 NIP7P2-201ENST00000485801 544 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 HMGN2P25-201ENST00000486956 268 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXD4P09016 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXD4P09016 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXD4P09016 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXD4P09016 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC137768.1-201ENST00000549998 553 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.64□□□□□ -1.67
HOXD4P09016 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC020915.5-201ENST00000596836 964 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC015660.5-201ENST00000623238 564 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
HOXD4P09016 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXD4P09016 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 AL031595.2-201ENST00000624215 19071 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 LINC01109-201ENST00000603837 3081 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC017079.1-201ENST00000333650 415 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 RPS24P12-201ENST00000402084 394 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 AC016397.1-201ENST00000412463 242 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 GJA6P-201ENST00000415117 1042 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 RAB9AP4-201ENST00000415230 609 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 EIF2S2P3-201ENST00000428356 999 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXD4P09016 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXD4P09016 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXD4P09016 OR6C72P-201ENST00000451403 892 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 snoU13.20-201ENST00000459180 104 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 RPL7P16-201ENST00000479738 738 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXD4P09016 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXD4P09016 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 OR7E128P-201ENST00000532736 1024 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXD4P09016 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC027369.5-201ENST00000533838 755 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 BNIP3P1-201ENST00000547295 580 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC063949.1-201ENST00000552900 865 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 NMNAT1P1-201ENST00000554095 876 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXD4P09016 RN7SL52P-201ENST00000584271 284 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 AF230666.2-201ENST00000602328 725 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 OR7M1P-201ENST00000608946 533 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.63□□□□□ -1.67
HOXD4P09016 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXD4P09016 UGT2B26P-201ENST00000508672 1613 ntBASIC4.63□□□□□ -1.67
HOXD4P09016 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXD4P09016 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HOXD4P09016 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXD4P09016 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
HOXD4P09016 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXD4P09016 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXD4P09016 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.62□□□□□ -1.67
HOXD4P09016 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms