Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 RPL7P11-201ENST00000437586 658 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 MRPL35P2-201ENST00000448009 511 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AL645937.3-201ENST00000453647 936 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 RPL32P9-201ENST00000487963 407 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS35Q96QK1 BTG4P1-201ENST00000510421 183 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC110775.1-201ENST00000513721 462 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC011487.3-201ENST00000593607 453 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC133644.2-201ENST00000608142 540 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 AL049794.2-201ENST00000616301 365 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 AL353662.3-201ENST00000625131 237 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS35Q96QK1 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS35Q96QK1 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
VPS35Q96QK1 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS35Q96QK1 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
VPS35Q96QK1 OR51H2P-202ENST00000641424 3046 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
VPS35Q96QK1 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS35Q96QK1 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 RNU4-23P-201ENST00000362839 140 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 SNORA73.1-201ENST00000363107 205 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 SNORA58B-201ENST00000364259 136 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 CHEK2P3-201ENST00000416118 248 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 AF186996.5-201ENST00000418098 904 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 LYPLA1P1-201ENST00000434514 622 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 AC008410.1-201ENST00000483777 339 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 RNA5SP360-201ENST00000516555 118 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 AGGF1P9-201ENST00000561884 913 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 AC018552.1-201ENST00000562099 811 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 AC087783.2-201ENST00000605070 562 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 AP001521.2-201ENST00000608772 546 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 AL606537.1-201ENST00000607258 2011 ntBASIC4.92□□□□□ -1.62
VPS35Q96QK1 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
VPS35Q96QK1 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS35Q96QK1 AC007342.9-201ENST00000623877 1385 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AP000542.2-201ENST00000623199 6179 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC017079.1-201ENST00000333650 415 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC007394.1-201ENST00000421941 531 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 UBE2V2P3-201ENST00000433562 437 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 MTND3P6-201ENST00000485242 339 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC093270.2-201ENST00000486157 792 ntBASIC4.91□□□□□ -1.62
VPS35Q96QK1 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS35Q96QK1 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms