Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RPL23AP74-201ENST00000437246 471 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 HSPE1P28-201ENST00000443139 211 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC005297.2-201ENST00000450430 606 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AKR1D1P1-201ENST00000457236 936 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 RN7SL259P-201ENST00000478499 253 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC041039.1-201ENST00000485656 536 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC026826.1-201ENST00000493002 361 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 HMGB1P29-201ENST00000505659 499 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ARL4AP2-201ENST00000507378 601 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC117522.1-201ENST00000509821 380 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 EEF1B2P2-201ENST00000519625 676 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 HSPA8P13-201ENST00000523715 472 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC068722.2-201ENST00000618734 544 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC104985.2-201ENST00000620598 500 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC000123.2-201ENST00000623124 461 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL732618.1-201ENST00000623251 301 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC130448.2-201ENST00000624082 374 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC092111.1-201ENST00000618256 3358 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC019072.1-201ENST00000604535 1551 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CDY19P-201ENST00000411668 1613 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CDY18P-201ENST00000438294 1609 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CR1-204ENST00000367052 7469 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CR1-205ENST00000367053 7469 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.1-201ENST00000352915 104 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RN7SKP257-201ENST00000364525 309 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RNU6-1293P-201ENST00000384077 107 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.573-201ENST00000384763 105 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RNA5SP53-201ENST00000391299 120 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RNU4ATAC2P-201ENST00000408674 126 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 RN7SKP30-201ENST00000411373 334 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 AC138393.2-201ENST00000414742 246 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC140Q96MF4 MTATP6P27-201ENST00000416987 621 ntBASIC5.41□□□□□ -1.54
CCDC140Q96MF4 MTCO1P20-201ENST00000425366 358 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms