Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SKA3Q8IX90 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
SKA3Q8IX90 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SKA3Q8IX90 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SKA3Q8IX90 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 LINC01109-201ENST00000603837 3081 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SKA3Q8IX90 SNORA66-201ENST00000384792 133 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 EIF4A1P1-201ENST00000420241 934 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AL627308.1-201ENST00000435693 821 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AL450023.3-201ENST00000440592 271 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 NDUFA5P8-201ENST00000449019 346 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 TCEA1P1-201ENST00000449716 880 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 IGHV5-78-201ENST00000450948 295 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 HMGB1P4-201ENST00000455362 567 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AL445433.1-201ENST00000457507 257 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 EIF2S2P5-201ENST00000457635 968 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC105918.1-201ENST00000474399 838 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC022336.1-201ENST00000475510 337 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 RPSAP50-201ENST00000481955 852 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 COX6B1P5-201ENST00000509843 249 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC012339.2-201ENST00000523996 453 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SKA3Q8IX90 OR7E128P-201ENST00000532736 1024 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AP001804.2-201ENST00000533932 910 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SKA3Q8IX90 AL512310.9-201ENST00000553311 948 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 NMNAT1P1-201ENST00000554095 876 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC011840.5-201ENST00000582125 771 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 OR7E18P-201ENST00000592589 702 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC093799.2-201ENST00000610062 578 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 SDR42E1P1-201ENST00000611327 477 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 LINC00901.1-201ENST00000617252 152 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC009237.17-201ENST00000618111 748 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 BX005214.3-202ENST00000619809 325 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SKA3Q8IX90 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.41□□□□□ -1.7
SKA3Q8IX90 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.4□□□□□ -1.7
SKA3Q8IX90 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.4□□□□□ -1.7
SKA3Q8IX90 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.4□□□□□ -1.7
SKA3Q8IX90 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SKA3Q8IX90 AL592182.3-201ENST00000642132 3304 ntBASIC4.4□□□□□ -1.7
SKA3Q8IX90 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.4□□□□□ -1.7
SKA3Q8IX90 SNORA70.10-201ENST00000384515 134 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
SKA3Q8IX90 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 AL607077.1-201ENST00000401718 499 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AL121834.1-202ENST00000404494 277 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 SPTLC1P2-201ENST00000407089 121 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 GJA6P-201ENST00000415117 1042 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 BMS1P13-201ENST00000417301 885 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC093162.1-201ENST00000419682 124 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 RHOT1P3-201ENST00000436571 331 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 BTF3P6-201ENST00000448054 499 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC073850.1-201ENST00000449243 255 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 RPL31P53-201ENST00000457065 348 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC026348.1-201ENST00000462549 1053 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 RPL23AP37-201ENST00000479658 549 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 RNA5SP43-201ENST00000516559 110 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 AC009268.1-201ENST00000561352 1203 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 MIR4691-201ENST00000583764 85 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AL159169.2-201ENST00000610061 1269 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AL627230.1-201ENST00000613077 211 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 AL591926.8-201ENST00000616876 211 ntBASIC4.4□□□□□ -1.71
SKA3Q8IX90 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SKA3Q8IX90 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
SKA3Q8IX90 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SKA3Q8IX90 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SKA3Q8IX90 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
SKA3Q8IX90 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SKA3Q8IX90 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
SKA3Q8IX90 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms