Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RPSAP39-201ENST00000467439 883 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 UBTFL6-201ENST00000477929 1024 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC3.53□□□□□ -1.84
FOXA3P55318 AC092349.1-201ENST00000504903 310 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA3P55318 IGLV3-26-201ENST00000520756 302 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
FOXA3P55318 NANOGNBP2-201ENST00000544753 553 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA3P55318 DUX4L52-201ENST00000549363 777 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA3P55318 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 SULT1C2P2-201ENST00000562517 294 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 EIF1P5-201ENST00000585002 234 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 OR1AB1P-201ENST00000585564 761 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC027243.2-201ENST00000602530 724 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC095055.1-201ENST00000603472 1113 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC105254.2-201ENST00000603636 436 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 FO393422.1-201ENST00000603908 708 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AL121932.1-201ENST00000605542 214 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC008966.2-201ENST00000606157 453 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC108865.2-201ENST00000606881 432 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AL022401.1-201ENST00000619498 108 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA3P55318 AC019206.1-201ENST00000621938 425 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA3P55318 AL353662.3-201ENST00000625131 237 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC3.53□□□□□ -1.84
FOXA3P55318 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.53□□□□□ -1.84
FOXA3P55318 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
FOXA3P55318 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.53□□□□□ -1.84
FOXA3P55318 AC107021.2-201ENST00000567714 2095 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.53□□□□□ -1.84
FOXA3P55318 AL136164.3-201ENST00000624429 3978 ntBASIC3.53□□□□□ -1.85
FOXA3P55318 MTND4P26-201ENST00000415971 1359 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 RNU1-43P-201ENST00000365052 165 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 RNA5SP22-201ENST00000365393 109 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 MIR93-201ENST00000385024 80 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
FOXA3P55318 RNA5SP104-201ENST00000410989 118 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 RPL21P91-201ENST00000429231 479 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXA3P55318 BX119904.1-201ENST00000432026 348 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 RPL10P17-201ENST00000453852 316 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 FGF7P3-201ENST00000454645 303 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 RN7SL547P-201ENST00000490793 290 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 PPM1AP1-201ENST00000502740 1135 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 RNA5SP154-201ENST00000516193 111 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 AC112191.2-201ENST00000522428 333 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 OR4A46P-201ENST00000527255 933 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXA3P55318 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 AC093249.4-201ENST00000564755 259 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC3.52□□□□□ -1.85
FOXA3P55318 OR1F2P-201ENST00000570470 933 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXA3P55318 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 AC023813.4-201ENST00000607580 580 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 AL359513.1-201ENST00000614364 557 ntBASIC3.52□□□□□ -1.85
FOXA3P55318 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXA3P55318 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.52□□□□□ -1.85
FOXA3P55318 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
FOXA3P55318 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
FOXA3P55318 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
FOXA3P55318 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
FOXA3P55318 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
FOXA3P55318 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.51□□□□□ -1.85
FOXA3P55318 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
FOXA3P55318 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
FOXA3P55318 AC023490.2-201ENST00000359859 470 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms