Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNU1-43P-201ENST00000365052 165 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 MIR600-201ENST00000385007 98 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
PTPN9P43378 CHMP1B2P-201ENST00000399581 597 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 DUTP5-201ENST00000406790 469 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 RNU2-17P-201ENST00000410290 190 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 VN1R51P-201ENST00000411675 945 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 PCNPP4-201ENST00000414817 517 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC5.4□□□□□ -1.54
PTPN9P43378 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.4□□□□□ -1.54
PTPN9P43378 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
PTPN9P43378 AC013262.1-201ENST00000426710 252 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
PTPN9P43378 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.4□□□□□ -1.54
PTPN9P43378 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC5.4□□□□□ -1.54
PTPN9P43378 PA2G4P6-201ENST00000438325 1197 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 MTCYBP12-201ENST00000440559 1134 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 RPL6P5-201ENST00000445678 828 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 AL606490.1-201ENST00000452266 765 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 AC020779.1-201ENST00000478757 796 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.4□□□□□ -1.54
PTPN9P43378 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC5.4□□□□□ -1.54
PTPN9P43378 AC100784.1-201ENST00000522790 310 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 AC138832.1-201ENST00000522871 556 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.4□□□□□ -1.54
PTPN9P43378 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.4□□□□□ -1.54
PTPN9P43378 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.4□□□□□ -1.54
PTPN9P43378 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.4□□□□□ -1.54
PTPN9P43378 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.4□□□□□ -1.54
PTPN9P43378 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.4□□□□□ -1.54
PTPN9P43378 MTND1P8-201ENST00000571424 950 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.4□□□□□ -1.54
PTPN9P43378 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC5.4□□□□□ -1.54
PTPN9P43378 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.4□□□□□ -1.54
PTPN9P43378 SNX6P1-201ENST00000601728 1224 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 RPAP2P1-201ENST00000603626 1168 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 AC026741.1-201ENST00000605892 482 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 AC034236.3-201ENST00000605999 461 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.4□□□□□ -1.54
PTPN9P43378 AC126915.2-201ENST00000610957 190 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 AC108359.1-201ENST00000616451 1211 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 MIR6729-201ENST00000618194 65 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.4□□□□□ -1.54
PTPN9P43378 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC5.4□□□□□ -1.54
PTPN9P43378 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
PTPN9P43378 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.4□□□□□ -1.54
PTPN9P43378 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
PTPN9P43378 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.4□□□□□ -1.54
PTPN9P43378 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.55
PTPN9P43378 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.4□□□□□ -1.55
PTPN9P43378 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTPN9P43378 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
PTPN9P43378 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTPN9P43378 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTPN9P43378 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTPN9P43378 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
PTPN9P43378 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
PTPN9P43378 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 AC007342.7-201ENST00000624610 2337 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.39□□□□□ -1.55
PTPN9P43378 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 MIR323B-201ENST00000385269 82 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 AL390316.1-201ENST00000406279 553 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.39□□□□□ -1.55
PTPN9P43378 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.39□□□□□ -1.55
PTPN9P43378 AC006065.1-201ENST00000422539 802 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.39□□□□□ -1.55
PTPN9P43378 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.39□□□□□ -1.55
PTPN9P43378 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.39□□□□□ -1.55
PTPN9P43378 CALM1P2-201ENST00000452941 448 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 PPM1AP1-201ENST00000502740 1135 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 RNA5SP230-201ENST00000517039 122 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC5.39□□□□□ -1.55
PTPN9P43378 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
PTPN9P43378 AP002884.5-201ENST00000595053 1132 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 RPSAP73-201ENST00000614820 330 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 AL122125.1-201ENST00000616999 600 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.39□□□□□ -1.55
PTPN9P43378 AP003485.1-201ENST00000625093 753 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 AP001002.2-201ENST00000625137 386 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.39□□□□□ -1.55
PTPN9P43378 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.39□□□□□ -1.55
PTPN9P43378 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.39□□□□□ -1.55
PTPN9P43378 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTPN9P43378 CASC19-221ENST00000641309 1382 ntBASIC5.39□□□□□ -1.55
PTPN9P43378 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
PTPN9P43378 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.39□□□□□ -1.55
PTPN9P43378 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.39□□□□□ -1.55
PTPN9P43378 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 159.3 ms