Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
BRCA1P38398 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
BRCA1P38398 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
BRCA1P38398 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
BRCA1P38398 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
BRCA1P38398 AL627171.1-201ENST00000618845 1308 ntBASIC5.65□□□□□ -1.51
BRCA1P38398 EIF2AP4-201ENST00000424793 1781 ntBASIC5.65□□□□□ -1.51
BRCA1P38398 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC5.65□□□□□ -1.51
BRCA1P38398 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.65□□□□□ -1.51
BRCA1P38398 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
BRCA1P38398 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
BRCA1P38398 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC5.64□□□□□ -1.51
BRCA1P38398 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 AP000580.1-201ENST00000404439 358 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.64□□□□□ -1.51
BRCA1P38398 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.64□□□□□ -1.51
BRCA1P38398 AL359265.1-201ENST00000440296 795 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 AC128716.1-201ENST00000475129 166 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.64□□□□□ -1.51
BRCA1P38398 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.64□□□□□ -1.51
BRCA1P38398 AC006116.5-201ENST00000591936 559 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.64□□□□□ -1.51
BRCA1P38398 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.64□□□□□ -1.51
BRCA1P38398 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 AC106871.1-201ENST00000568324 3102 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 AC140134.1-201ENST00000511830 3544 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.64□□□□□ -1.51
BRCA1P38398 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.64□□□□□ -1.51
BRCA1P38398 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC5.64□□□□□ -1.51
BRCA1P38398 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.64□□□□□ -1.51
BRCA1P38398 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.64□□□□□ -1.51
BRCA1P38398 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.64□□□□□ -1.51
BRCA1P38398 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.64□□□□□ -1.51
BRCA1P38398 AL133547.1-201ENST00000448546 220 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.64□□□□□ -1.51
BRCA1P38398 RPL35P6-201ENST00000490024 372 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.64□□□□□ -1.51
BRCA1P38398 AC008958.1-201ENST00000511047 682 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 IGKV2-23-201ENST00000518729 323 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.64□□□□□ -1.51
BRCA1P38398 AC008739.3-201ENST00000603262 127 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 AC093388.1-201ENST00000609166 430 ntBASIC5.64□□□□□ -1.51
BRCA1P38398 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.64□□□□□ -1.51
BRCA1P38398 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
BRCA1P38398 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.63□□□□□ -1.51
BRCA1P38398 AC092451.3-201ENST00000625067 1343 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
BRCA1P38398 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 AL161909.1-201ENST00000397390 712 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.63□□□□□ -1.51
BRCA1P38398 RPL23AP52-201ENST00000439311 478 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 RPS27AP16-201ENST00000492222 470 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 PGBD4P4-201ENST00000509673 613 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 AC006499.6-201ENST00000511169 607 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.63□□□□□ -1.51
BRCA1P38398 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.63□□□□□ -1.51
BRCA1P38398 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.63□□□□□ -1.51
BRCA1P38398 PRPF19P1-201ENST00000584766 898 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.63□□□□□ -1.51
BRCA1P38398 AC009120.7-201ENST00000623452 780 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
BRCA1P38398 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
BRCA1P38398 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.63□□□□□ -1.51
BRCA1P38398 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
BRCA1P38398 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
BRCA1P38398 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 RN7SKP202-201ENST00000410439 330 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AC093578.1-201ENST00000415219 368 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AC008280.1-201ENST00000418851 412 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.62□□□□□ -1.51
BRCA1P38398 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
BRCA1P38398 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.62□□□□□ -1.51
BRCA1P38398 PSMB7P1-201ENST00000556349 514 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 AC103968.1-201ENST00000557841 573 ntBASIC5.62□□□□□ -1.51
BRCA1P38398 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.62□□□□□ -1.51
BRCA1P38398 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.62□□□□□ -1.51
BRCA1P38398 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
BRCA1P38398 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms