Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RPL7P50-201ENST00000600588 727 ntBASIC5.63□□□□□ -1.51
SCN4AP35499 AC026367.3-201ENST00000619032 590 ntBASIC5.63□□□□□ -1.51
SCN4AP35499 AP005019.3-201ENST00000620418 560 ntBASIC5.63□□□□□ -1.51
SCN4AP35499 AP003497.2-201ENST00000624220 967 ntBASIC5.63□□□□□ -1.51
SCN4AP35499 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SCN4AP35499 AC025031.4-201ENST00000621248 3271 ntBASIC5.63□□□□□ -1.51
SCN4AP35499 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
SCN4AP35499 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.63□□□□□ -1.51
SCN4AP35499 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SCN4AP35499 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
SCN4AP35499 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.63□□□□□ -1.51
SCN4AP35499 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SCN4AP35499 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SCN4AP35499 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.63□□□□□ -1.51
SCN4AP35499 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SCN4AP35499 AC109446.4-201ENST00000623235 2755 ntBASIC5.63□□□□□ -1.51
SCN4AP35499 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SCN4AP35499 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.63□□□□□ -1.51
SCN4AP35499 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
SCN4AP35499 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 RPL23AP26-201ENST00000412728 464 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.62□□□□□ -1.51
SCN4AP35499 AC073073.1-201ENST00000493920 463 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 NIFKP7-201ENST00000503365 834 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 SNORA67.7-201ENST00000516664 135 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 IGKV2-23-201ENST00000518729 323 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 TRAV8-5-201ENST00000537369 341 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.62□□□□□ -1.51
SCN4AP35499 AC025884.1-201ENST00000556034 378 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.62□□□□□ -1.51
SCN4AP35499 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.62□□□□□ -1.51
SCN4AP35499 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.62□□□□□ -1.51
SCN4AP35499 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SCN4AP35499 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.62□□□□□ -1.51
SCN4AP35499 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.62□□□□□ -1.51
SCN4AP35499 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 MIR659-201ENST00000384963 97 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 U3.32-201ENST00000408116 212 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 EIF4A1P3-201ENST00000411521 244 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 RCC2P2-201ENST00000422174 918 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 RN7SL132P-201ENST00000478131 296 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.62□□□□□ -1.51
SCN4AP35499 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.62□□□□□ -1.51
SCN4AP35499 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SCN4AP35499 AP005901.4-201ENST00000577336 569 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 AC009120.7-201ENST00000623452 780 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 AC090506.2-201ENST00000624521 419 ntBASIC5.62□□□□□ -1.51
SCN4AP35499 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SCN4AP35499 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.62□□□□□ -1.51
SCN4AP35499 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.62□□□□□ -1.51
SCN4AP35499 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SCN4AP35499 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.61□□□□□ -1.51
SCN4AP35499 AC020656.2-201ENST00000613291 5309 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 CR1-203ENST00000367051 7469 ntTSL 5 BASIC5.61□□□□□ -1.51
SCN4AP35499 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.61□□□□□ -1.51
SCN4AP35499 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
SCN4AP35499 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SCN4AP35499 AL137141.1-201ENST00000624622 4836 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 SOCS5P3-201ENST00000425115 1576 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SCN4AP35499 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SCN4AP35499 TMSB10P2-201ENST00000416049 131 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.61□□□□□ -1.51
SCN4AP35499 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.61□□□□□ -1.51
SCN4AP35499 OR8R1P-201ENST00000543943 764 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.61□□□□□ -1.51
SCN4AP35499 MTCYBP13-201ENST00000578634 1093 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.61□□□□□ -1.51
SCN4AP35499 AC008833.1-201ENST00000611633 691 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 AC005899.7-201ENST00000618199 588 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 AC011815.3-201ENST00000624194 473 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 AC004777.1-201ENST00000624317 287 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.61□□□□□ -1.51
SCN4AP35499 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SCN4AP35499 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
SCN4AP35499 AP001029.2-203ENST00000589795 4910 ntBASIC5.61□□□□□ -1.51
SCN4AP35499 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
SCN4AP35499 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SCN4AP35499 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SCN4AP35499 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SCN4AP35499 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SCN4AP35499 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SCN4AP35499 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SCN4AP35499 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SCN4AP35499 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.6□□□□□ -1.51
SCN4AP35499 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
SCN4AP35499 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SCN4AP35499 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SCN4AP35499 AC011998.1-201ENST00000433403 117 ntBASIC5.6□□□□□ -1.51
SCN4AP35499 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.6□□□□□ -1.51
SCN4AP35499 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.6□□□□□ -1.51
SCN4AP35499 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms