Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC3.71□□□□□ -1.82
HLA-DMBP28068 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
HLA-DMBP28068 DDX18P5-201ENST00000534547 1306 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 CASC19-206ENST00000641028 1430 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 RN7SKP224-201ENST00000364140 325 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 MIR550A3-201ENST00000390735 95 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 RPS24P12-201ENST00000402084 394 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AL592291.1-201ENST00000403830 352 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 TBCAP2-201ENST00000416175 326 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 CYCSP10-201ENST00000417973 294 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AF186996.5-201ENST00000418098 904 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 E2F6P2-201ENST00000420708 748 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 RBMY2QP-201ENST00000429799 1147 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 VN1R54P-201ENST00000435210 1049 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 UBE2V2P4-201ENST00000447495 259 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC000111.2-201ENST00000448200 210 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 ALG13-211ENST00000473389 693 ntTSL 2 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 BX284632.1-201ENST00000478218 541 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AK5-208ENST00000478255 556 ntTSL 2 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 OR9N1P-201ENST00000491296 333 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 OR2A3P-201ENST00000493774 953 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 AF186190.1-201ENST00000517470 480 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 NMNAT1P1-201ENST00000554095 876 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC007066.2-202ENST00000566531 914 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC024940.4-201ENST00000605507 246 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 MIR8069-1-201ENST00000616627 86 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 MIR8069-2-201ENST00000621412 86 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AC012414.7-202ENST00000622705 1090 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 AL353662.3-201ENST00000625131 237 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HLA-DMBP28068 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DMBP28068 UGT2B26P-201ENST00000508672 1613 ntBASIC3.7□□□□□ -1.82
HLA-DMBP28068 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DMBP28068 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 THAP12P4-201ENST00000528321 2266 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 DDX18P4-201ENST00000511690 1966 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC104118.1-201ENST00000607625 1589 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 NXF4-202ENST00000416098 1465 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 SNURFL-201ENST00000309296 343 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 OR52B1P-201ENST00000316506 909 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 RN7SKP103-201ENST00000363848 320 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AL133270.1-201ENST00000402635 279 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 EIF4A1P1-201ENST00000420241 934 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 AL590762.4-201ENST00000425885 253 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC097484.1-201ENST00000471148 389 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 RPL5P16-201ENST00000471467 790 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC098583.1-201ENST00000480875 255 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 RPS23P1-201ENST00000491662 432 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 RNU6ATAC24P-201ENST00000516811 135 ntBASIC3.69□□□□□ -1.82
HLA-DMBP28068 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC3.69□□□□□ -1.82
HLA-DMBP28068 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms