Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC022916.3-201ENST00000592961 742 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AC008785.1-201ENST00000624475 456 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A3P25940 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
COL5A3P25940 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A3P25940 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A3P25940 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.73□□□□□ -1.49
COL5A3P25940 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A3P25940 MIR372-201ENST00000362225 67 ntBASIC5.73□□□□□ -1.49
COL5A3P25940 RNU1-45P-201ENST00000517191 141 ntBASIC5.73□□□□□ -1.49
COL5A3P25940 AP003730.1-201ENST00000524605 285 ntBASIC5.73□□□□□ -1.49
COL5A3P25940 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.73□□□□□ -1.49
COL5A3P25940 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.73□□□□□ -1.49
COL5A3P25940 AC023043.4-201ENST00000612081 449 ntBASIC5.73□□□□□ -1.49
COL5A3P25940 AP000648.2-201ENST00000624182 404 ntBASIC5.73□□□□□ -1.49
COL5A3P25940 AC112200.1-201ENST00000625015 234 ntBASIC5.73□□□□□ -1.49
COL5A3P25940 ADAM5-202ENST00000399789 1942 ntBASIC5.73□□□□□ -1.49
COL5A3P25940 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.73□□□□□ -1.49
COL5A3P25940 AL122126.1-201ENST00000546905 1318 ntBASIC5.73□□□□□ -1.49
COL5A3P25940 MAPK10-372ENST00000641954 3413 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A3P25940 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A3P25940 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
COL5A3P25940 SNORA48.7-201ENST00000391302 135 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 PCNPP4-201ENST00000414817 517 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A3P25940 EIF4HP2-201ENST00000424380 563 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.72□□□□□ -1.49
COL5A3P25940 RPL21P43-201ENST00000425440 472 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 AL049874.2-201ENST00000492636 288 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.72□□□□□ -1.49
COL5A3P25940 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.72□□□□□ -1.49
COL5A3P25940 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.72□□□□□ -1.49
COL5A3P25940 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.72□□□□□ -1.49
COL5A3P25940 AC099676.1-201ENST00000608886 657 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 MIR6867-201ENST00000610636 67 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 OR8G7P-201ENST00000616658 848 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 AC005899.7-201ENST00000618199 588 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.72□□□□□ -1.49
COL5A3P25940 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.72□□□□□ -1.49
COL5A3P25940 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.72□□□□□ -1.49
COL5A3P25940 AC092451.3-201ENST00000625067 1343 ntBASIC5.72□□□□□ -1.49
COL5A3P25940 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A3P25940 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A3P25940 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A3P25940 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A3P25940 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.72□□□□□ -1.49
COL5A3P25940 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.72□□□□□ -1.49
COL5A3P25940 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL5A3P25940 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL5A3P25940 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL5A3P25940 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.71□□□□□ -1.49
COL5A3P25940 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.71□□□□□ -1.49
COL5A3P25940 TDGF1P1-201ENST00000445734 527 ntBASIC5.71□□□□□ -1.49
COL5A3P25940 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.71□□□□□ -1.49
COL5A3P25940 AP001804.2-201ENST00000533932 910 ntBASIC5.71□□□□□ -1.49
COL5A3P25940 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.49
COL5A3P25940 PSMB7P1-201ENST00000556349 514 ntBASIC5.71□□□□□ -1.49
COL5A3P25940 AC034105.4-201ENST00000568304 277 ntBASIC5.71□□□□□ -1.49
COL5A3P25940 AC006116.5-201ENST00000591936 559 ntBASIC5.71□□□□□ -1.49
COL5A3P25940 BNIP3P22-201ENST00000593399 556 ntBASIC5.71□□□□□ -1.49
COL5A3P25940 uc_338.13-201ENST00000618243 179 ntBASIC5.71□□□□□ -1.49
COL5A3P25940 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
COL5A3P25940 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL5A3P25940 AL137918.1-201ENST00000624542 1922 ntBASIC5.71□□□□□ -1.49
COL5A3P25940 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL5A3P25940 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A3P25940 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.71□□□□□ -1.5
COL5A3P25940 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.71□□□□□ -1.5
COL5A3P25940 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A3P25940 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A3P25940 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A3P25940 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A3P25940 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A3P25940 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.71□□□□□ -1.5
COL5A3P25940 MIR331-201ENST00000362302 94 ntBASIC5.71□□□□□ -1.5
COL5A3P25940 RNA5SP44-201ENST00000410446 133 ntBASIC5.71□□□□□ -1.5
COL5A3P25940 AC009237.10-201ENST00000414112 510 ntBASIC5.71□□□□□ -1.5
COL5A3P25940 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.71□□□□□ -1.5
COL5A3P25940 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.71□□□□□ -1.5
COL5A3P25940 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.71□□□□□ -1.5
COL5A3P25940 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.71□□□□□ -1.5
COL5A3P25940 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.71□□□□□ -1.5
COL5A3P25940 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A3P25940 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A3P25940 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A3P25940 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A3P25940 AC018628.1-201ENST00000624147 3819 ntBASIC5.7□□□□□ -1.5
COL5A3P25940 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A3P25940 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A3P25940 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.7□□□□□ -1.5
COL5A3P25940 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A3P25940 RNA5SP283-201ENST00000365604 119 ntBASIC5.7□□□□□ -1.5
COL5A3P25940 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.7□□□□□ -1.5
COL5A3P25940 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.7□□□□□ -1.5
COL5A3P25940 AC104651.2-201ENST00000447549 528 ntBASIC5.7□□□□□ -1.5
COL5A3P25940 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.7□□□□□ -1.5
COL5A3P25940 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.7□□□□□ -1.5
COL5A3P25940 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.7□□□□□ -1.5
COL5A3P25940 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms