Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC005034.3-201ENST00000604845 1747 ntBASIC7.78□□□□□ -1.16
COL9A1P20849 AOX1-202ENST00000374700 5074 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL9A1P20849 AC005592.1-201ENST00000566527 1640 ntBASIC7.78□□□□□ -1.16
COL9A1P20849 KYNUP1-201ENST00000466683 1406 ntBASIC7.78□□□□□ -1.16
COL9A1P20849 MFSD8-227ENST00000641393 4069 ntBASIC7.78□□□□□ -1.16
COL9A1P20849 TNIK-210ENST00000470834 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL9A1P20849 LINC02128-205ENST00000641755 1334 ntBASIC7.78□□□□□ -1.16
COL9A1P20849 PAICS-202ENST00000399688 3297 ntTSL 1 (best) BASIC7.77□□□□□ -1.16
COL9A1P20849 ZNF577-201ENST00000301399 3074 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.16
COL9A1P20849 AL357055.3-201ENST00000421157 2459 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 NSD2-207ENST00000398261 8390 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 MET-204ENST00000436117 2295 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 PALLD-206ENST00000505667 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 DIS3L2-202ENST00000325385 3501 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
COL9A1P20849 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 PIWIL3-204ENST00000533313 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 LPAR6-202ENST00000378434 3004 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 OR2T11-202ENST00000641193 3770 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
COL9A1P20849 APOL3-202ENST00000361710 3563 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 A2ML1-205ENST00000539547 3460 ntTSL 2 BASIC7.77□□□□□ -1.17
COL9A1P20849 ZNF185-212ENST00000539731 4334 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.17
COL9A1P20849 EFCAB7-201ENST00000371088 2313 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.77□□□□□ -1.17
COL9A1P20849 SNORD113-7-201ENST00000363762 77 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 SNORA75B-201ENST00000384053 137 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 RNU6-952P-201ENST00000391164 108 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC7.77□□□□□ -1.17
COL9A1P20849 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.77□□□□□ -1.17
COL9A1P20849 SKA2P1-201ENST00000425592 390 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC7.77□□□□□ -1.17
COL9A1P20849 AC018804.1-201ENST00000430381 618 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC7.77□□□□□ -1.17
COL9A1P20849 HMGB3P11-201ENST00000440127 604 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AC104332.1-201ENST00000440471 797 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AC021205.1-201ENST00000468797 348 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 MED28P2-201ENST00000475771 317 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 GRHL1-206ENST00000480736 572 ntTSL 4 BASIC7.77□□□□□ -1.17
COL9A1P20849 RPL38P3-201ENST00000484463 213 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AL049874.2-201ENST00000492636 288 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 SUMO2P4-201ENST00000504193 276 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AC022360.1-201ENST00000521058 340 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC7.77□□□□□ -1.17
COL9A1P20849 AC023157.2-201ENST00000540596 141 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AC008083.2-201ENST00000546707 476 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AC024257.1-201ENST00000547523 566 ntTSL 4 BASIC7.77□□□□□ -1.17
COL9A1P20849 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC7.77□□□□□ -1.17
COL9A1P20849 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC7.77□□□□□ -1.17
COL9A1P20849 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC7.77□□□□□ -1.17
COL9A1P20849 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.77□□□□□ -1.17
COL9A1P20849 AL031777.2-201ENST00000611953 196 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC7.77□□□□□ -1.17
COL9A1P20849 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
COL9A1P20849 MIR8062-201ENST00000621515 85 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 MIR6503-201ENST00000622884 86 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AL669831.3-213ENST00000636676 183 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AC009148.1-201ENST00000570148 2693 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 MAPK10-329ENST00000641555 2656 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 TYW1-201ENST00000359626 3348 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 AL442128.2-201ENST00000620246 1824 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 AP002370.1-201ENST00000528055 1602 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 ATP5A1P4-201ENST00000556888 1605 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 HSP90AA2P-201ENST00000530115 2196 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 AC104083.1-201ENST00000569449 2615 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 HERC2P8-202ENST00000564334 3705 ntBASIC7.77□□□□□ -1.17
COL9A1P20849 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL9A1P20849 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
COL9A1P20849 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC7.76□□□□□ -1.17
COL9A1P20849 CKAP2-203ENST00000378037 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 MKL2-205ENST00000572567 2185 ntTSL 2 BASIC7.76□□□□□ -1.17
COL9A1P20849 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC7.76□□□□□ -1.17
COL9A1P20849 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 MASP1-205ENST00000392472 3900 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 MAGT1-205ENST00000618282 2788 ntAPPRIS ALT1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 ZNF195-203ENST00000343338 3145 ntAPPRIS ALT2 TSL 4 BASIC7.76□□□□□ -1.17
COL9A1P20849 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 U3.18-201ENST00000390880 216 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 Y_RNA.645-201ENST00000391229 102 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 RPL7P60-201ENST00000397636 735 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC7.76□□□□□ -1.17
COL9A1P20849 ATG3P1-201ENST00000419507 911 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC7.76□□□□□ -1.17
COL9A1P20849 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC7.76□□□□□ -1.17
COL9A1P20849 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC7.76□□□□□ -1.17
COL9A1P20849 RPL3P11-201ENST00000434028 1146 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 RPS20P5-201ENST00000434808 360 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 AC009988.1-201ENST00000434988 310 ntTSL 5 BASIC7.76□□□□□ -1.17
COL9A1P20849 YWHAZP8-201ENST00000436935 731 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC7.76□□□□□ -1.17
COL9A1P20849 RPS20P32-201ENST00000456044 356 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 AC104563.1-201ENST00000476147 376 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 RPL5P22-201ENST00000480199 884 ntBASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 160.6 ms