Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
MSH3P20585 SNURFL-201ENST00000309296 343 ntBASIC5.04□□□□□ -1.6
MSH3P20585 RNA5SP507-201ENST00000363603 121 ntBASIC5.04□□□□□ -1.6
MSH3P20585 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
MSH3P20585 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSH3P20585 RNU6-40P-201ENST00000384254 107 ntBASIC5.04□□□□□ -1.6
MSH3P20585 MIR765-201ENST00000390226 114 ntBASIC5.04□□□□□ -1.6
MSH3P20585 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.04□□□□□ -1.6
MSH3P20585 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC5.04□□□□□ -1.6
MSH3P20585 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.04□□□□□ -1.6
MSH3P20585 GTF3AP5-201ENST00000442645 697 ntBASIC5.04□□□□□ -1.6
MSH3P20585 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.04□□□□□ -1.6
MSH3P20585 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.04□□□□□ -1.6
MSH3P20585 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.04□□□□□ -1.6
MSH3P20585 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.04□□□□□ -1.6
MSH3P20585 AC105918.1-201ENST00000474399 838 ntBASIC5.04□□□□□ -1.6
MSH3P20585 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.04□□□□□ -1.6
MSH3P20585 HMGN2P25-201ENST00000486956 268 ntBASIC5.04□□□□□ -1.6
MSH3P20585 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSH3P20585 NIFKP7-201ENST00000503365 834 ntBASIC5.04□□□□□ -1.6
MSH3P20585 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC5.04□□□□□ -1.6
MSH3P20585 DPRXP4-201ENST00000578053 568 ntBASIC5.04□□□□□ -1.6
MSH3P20585 DNAJC19P3-201ENST00000594491 331 ntBASIC5.04□□□□□ -1.6
MSH3P20585 MIMT1-201ENST00000597105 1050 ntBASIC5.04□□□□□ -1.6
MSH3P20585 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC5.04□□□□□ -1.6
MSH3P20585 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC5.04□□□□□ -1.6
MSH3P20585 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.04□□□□□ -1.6
MSH3P20585 OR10AB1P-202ENST00000641219 1686 ntBASIC5.04□□□□□ -1.6
MSH3P20585 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSH3P20585 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.04□□□□□ -1.6
MSH3P20585 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
MSH3P20585 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSH3P20585 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSH3P20585 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.04□□□□□ -1.6
MSH3P20585 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
MSH3P20585 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
MSH3P20585 AL592494.2-201ENST00000425455 1548 ntBASIC5.03□□□□□ -1.6
MSH3P20585 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.03□□□□□ -1.6
MSH3P20585 AC109780.1-201ENST00000451768 1344 ntBASIC5.03□□□□□ -1.6
MSH3P20585 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
MSH3P20585 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 NXF4-202ENST00000416098 1465 ntBASIC5.03□□□□□ -1.6
MSH3P20585 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
MSH3P20585 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.03□□□□□ -1.6
MSH3P20585 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
MSH3P20585 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 RNA5SP455-201ENST00000365190 119 ntBASIC5.03□□□□□ -1.6
MSH3P20585 SNORD51.1-201ENST00000365405 77 ntBASIC5.03□□□□□ -1.6
MSH3P20585 RNU1-106P-201ENST00000384382 164 ntBASIC5.03□□□□□ -1.6
MSH3P20585 SNORA66-201ENST00000384792 133 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AC005522.1-201ENST00000395416 346 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AL356057.1-202ENST00000402263 756 ntBASIC5.03□□□□□ -1.6
MSH3P20585 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.03□□□□□ -1.6
MSH3P20585 SPTLC1P2-201ENST00000407089 121 ntBASIC5.03□□□□□ -1.6
MSH3P20585 SEPT7P8-201ENST00000413308 775 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 AC093162.1-201ENST00000419682 124 ntBASIC5.03□□□□□ -1.6
MSH3P20585 OR6C64P-201ENST00000419708 825 ntBASIC5.03□□□□□ -1.6
MSH3P20585 PTP4A1P1-201ENST00000420539 515 ntBASIC5.03□□□□□ -1.6
MSH3P20585 RNF19BPX-201ENST00000426224 625 ntBASIC5.03□□□□□ -1.6
MSH3P20585 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 Z99127.2-201ENST00000441426 334 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AL158053.1-201ENST00000441503 453 ntBASIC5.03□□□□□ -1.6
MSH3P20585 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.03□□□□□ -1.6
MSH3P20585 GXYLT1P1-201ENST00000446657 490 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.03□□□□□ -1.6
MSH3P20585 AC090114.3-201ENST00000479267 829 ntBASIC5.03□□□□□ -1.6
MSH3P20585 RN7SL244P-201ENST00000493405 297 ntBASIC5.03□□□□□ -1.6
MSH3P20585 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 AC010350.1-201ENST00000504908 231 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AC008638.1-201ENST00000506035 866 ntBASIC5.03□□□□□ -1.6
MSH3P20585 OR5M14P-201ENST00000506803 618 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 AC004980.4-201ENST00000513375 203 ntBASIC5.03□□□□□ -1.6
MSH3P20585 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 RNU6-889P-201ENST00000517189 103 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AP006245.2-201ENST00000522004 300 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 AP001804.2-201ENST00000533932 910 ntBASIC5.03□□□□□ -1.6
MSH3P20585 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 HMGN2P6-201ENST00000551091 273 ntBASIC5.03□□□□□ -1.6
MSH3P20585 NDUFB4P11-201ENST00000560510 395 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.03□□□□□ -1.6
MSH3P20585 AL133247.2-201ENST00000603236 482 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AC013244.1-201ENST00000604279 193 ntBASIC5.03□□□□□ -1.6
MSH3P20585 HMGB1P51-201ENST00000605166 638 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AP005432.2-201ENST00000608162 586 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AC108359.1-201ENST00000616451 1211 ntBASIC5.03□□□□□ -1.6
MSH3P20585 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC5.03□□□□□ -1.6
MSH3P20585 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 LINC01739-205ENST00000641890 573 ntBASIC5.03□□□□□ -1.6
MSH3P20585 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms